Skip to main content

Table 5 Optimal SOM parameter values.

From: Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps

Case

Map size

Radius

Training

length

Neighbour function

Actual

Predicted

Time (s)

WT

100

3

5000

gaussian

158

156

50

R21G

100

3

5000

gaussian

265

270

50

WT+R21G

100

3

5000

gaussian

259

238

105

ALL

100

3

5000

gaussian

254

246

340

  1. See Table 1 for the parameter definition.