BMC Bioinformatics

Table 6 Test on the effects of different sampling rates for the WT SH3 and the R21G and N47A mutants.

From: Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps

		statistic			p-value			result
number of conformations	sample	WT	R21G	N47A	WT	R21G	N47A	WT	R21G	N47A
20000	1	25	27	16	1.00	1.00	1.00	-	-	-
	2	17	28	17	1.00	1.00	1.00	-	-	-
	3	19	29	22	1.00	1.00	1.00	-	-	-
10000	1	29	35	34	1.00	1.00	0.98	-	-	-
	2	28	37	36	1.00	1.00	0.98	-	-	-
	3	33	36	21	0.99	1.00	1.00	-	-	-
5000	1	30	33	30	1.00	1.00	0.98	-	-	-
	2	49	49	28	0.91	0.98	0.98	-	-	-
	3	34	37	30	0.99	1.00	0.99	-	-	-
2500	1	63	53	23	0.26	0.92	0.99	-	-	-
	2	51	48	56	0.76	0.99	0.22	-	-	-
	3	39	44	34	0.92	0.99	0.98	-	-	-
1600	1	43	49	31	0.82	0.93	0.96	-	-	-
	2	42	63	28	0.86	0.74	0.95	-	-	-
	3	45	48	41	0.90	0.97	0.77	-	-	-
800	1	40	57	73	0.92	0.89	0.06	-	-	-
	2	57	43	49	0.52	0.99	0.47	-	-	-
	3	54	44	36	0.48	0.98	0.80	-	-	-
400	1	48	73	39	0.63	0.11	0.49	-	-	-
	2	50	49	55	0.55	0.93	0.16	-	-	-
	3	34	39	46	0.96	0.99	0.47	-	-	-
80	1	40	83	54	0.28	0.00	0.02	-	*	*
	2	63	64	38	0.00	0.00	0.08	*	*	-
	3	81	46	50	0.00	0.43	0.04	*	-	*
40	1	167	84	67	0.00	0.00	0.00	*	*	*
	2	105	62	95	0.00	0.00	0.00	*	*	*
	3	101	60	67	0.00	0.00	0.00	*	*	*

k = 3 and α = 0.05. Statistic, p-value and the output of the hypothesis test are reported; (-) means that the null hypothesis cannot be rejected while (*) means that the null hypothesis has been rejected.

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