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Table 1 Comparison of running times, dimension reduction rates and entropy compression rates between CFHLC and other algorithms, for Daly et al.'s dataset: Daly et al.'s method [29], Gerbil [25], HaploBlock [13] and Zhang et al.'s algorithm [16].

From: A hierarchical Bayesian network approach for linkage disequilibrium modeling and data-dimensionality reduction prior to genome-wide association studies

Algorithm

Running time

Dimension reduction rates

Entropy compression rates

Daly et al.'s method

-

0.107

0.313

Gerbil

40 s

0.107

0.300

HaploBlock

158 mn

0.066

0.241

Zhang et al.'s algorithm

168 s

0.078

0.229

CFHLC

84 s

0.146

0.231

  1. We ran the last three programs on a standard computer. As we had no access to Daly et al.'s software, we could only compare the dimension reduction rates and entropy compression rates calculated from their results with the dimension reduction rates and entropy compression rates obtained with the other methods.