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Table 11 The mean MCC and BDT raw scores and Z-scores obtained by FunFOLD are compared with those obtained by the top CASP9 function prediction groups - as in Table 9 except for CASP9 targets containing non-metal ligand s or metal and non-metal ligand s in the same binding site.

From: FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

Group ID N Mean score for group Mean score for FunFOLD Difference in mean score Mean Z-score for group Mean Z-score for FunFOLD P-value
(raw score)
P-value
(Z-score)
1 - p-value
(raw score)
1 - p-value
(Z-score)
   MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT MCC BDT
FN035 17 0.707 0.636 0.582 0.516 -0.125 -0.019 0.698 0.647 0.056 0.105 0.888 0.951 0.922 0.940 0.112 0.049 0.078 0.060
FN096 17 0.718 0.654 0.582 0.516 -0.136 -0.138 0.638 0.566 0.056 0.105 0.934 0.827 0.920 0.858 0.066 0.073 0.080 0.412
FN315 17 0.681 0.592 0.582 0.516 -0.099 -0.076 0.528 0.345 0.056 0.105 0.785 0.741 0.798 0.694 0.215 0.259 0.202 0.306
FN242 16 0.696 0.613 0.582 0.522 -0.113 -0.091 0.505 0.389 0.014 0.093 0.934 0.795 0.947 0.795 0.066 0.205 0.053 0.205
FN339 17 0.688 0.630 0.582 0.516 -0.106 -0.114 0.457 0.455 0.056 0.105 0.836 0.847 0.741 0.824 0.164 0.153 0.259 0.176
FN110 17 0.648 0.609 0.582 0.516 -0.066 -0.093 0.176 0.381 0.056 0.105 0.710 0.878 0.518 0.741 0.290 0.122 0.482 0.259
FN104 17 0.636 0.549 0.582 0.516 -0.054 -0.033 0.135 0.006 0.056 0.105 0.644 0.463 0.573 0.391 0.356 0.537 0.427 0.609
FN236 17 0.563 0.481 0.582 0.516 0.019 0.035 -0.128 -0.262 0.056 0.105 0.377 0.134 0.295 0.122 0.623 0.866 0.705 0.878
FN094 17 0.551 0.461 0.582 0.516 0.031 0.055 -0.145 -0.263 0.056 0.105 0.122 0.021 0.183 0.023 0.878 0.979 0.817 0.977
FN017 17 0.551 0.500 0.582 0.516 0.031 0.016 -0.215 -0.103 0.056 0.105 0.290 0.259 0.202 0.215 0.710 0.741 0.798 0.785
FN452 16 0.583 0.519 0.582 0.516 -0.001 0.003 -0.253 -0.209 0.014 0.093 0.556 0.421 0.421 0.257 0.444 0.579 0.579 0.743
FN114 17 0.555 0.448 0.582 0.516 0.027 0.068 -0.263 -0.515 0.056 0.105 0.276 0.046 0.197 0.030 0.724 0.954 0.803 0.970
FN415 17 0.546 0.494 0.582 0.516 0.036 0.023 -0.271 -0.183 0.056 0.105 0.244 0.189 0.142 0.122 0.756 0.811 0.853 0.878
FN113 17 0.562 0.501 0.582 0.516 0.020 0.015 -0.333 -0.211 0.056 0.105 0.274 0.356 0.164 0.259 0.726 0.644 0.836 0.741
FN425 16 0.494 0.404 0.582 0.516 0.089 0.112 -0.434 -0.517 -0.013 0.046 0.147 0.035 0.132 0.047 0.853 0.965 0.868 0.953
FN057 17 0.507 0.468 0.582 0.516 0.075 0.048 0.569 0.323 0.056 0.105 0.060 0.148 0.028 0.080 0.940 0.164 0.972 0.836
FN072 17 0.506 0.473 0.582 0.516 0.076 0.043 0.592 0.328 0.056 0.105 0.094 0.183 0.052 0.095 0.906 0.274 0.948 0.726