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Table 2 Positive fraction and specificity of the estimation results of NSMAP on the two simulated data sets.

From: NSMAP: A method for spliced isoforms identification and quantification from RNA-Seq

Isoform expressions in RPKM
Tissue RPKM [1,10) [10,10 2 ) [10 2 ,10 3 ) [10 3 ,10 4 ) Total
Brain p = 1/2 Number of isoforms 7,730 5,630 767 27 14,151
  Positive fraction 67.9% 88.2% 95.4% 100.0% 77.5%
  Specificity      83.6%
p = 1 Positive fraction 67.8% 87.9% 95.3% 100.0% 77.3%
  Specificity      83.3%
Liver p = 1/2 Number of isoforms 6,470 3,390 661 62 10,583
  Positive fraction 70.0% 89.8% 97.1% 100.0% 78.2%
  Specificity      90.3%
p = 1 Positive fraction 69.5% 89.7% 97.1% 100.0% 77.9%
  Specificity      89.8%