Table 2 Positive fraction and specificity of the estimation results of NSMAP on the two simulated data sets.
From: NSMAP: A method for spliced isoforms identification and quantification from RNA-Seq
Isoform expressions in RPKM | ||||||
|---|---|---|---|---|---|---|
Tissue | RPKM | [1,10) | [10,10 2 ) | [10 2 ,10 3 ) | [10 3 ,10 4 ) | Total |
Brain p = 1/2 | Number of isoforms | 7,730 | 5,630 | 767 | 27 | 14,151 |
| Â | Positive fraction | 67.9% | 88.2% | 95.4% | 100.0% | 77.5% |
| Â | Specificity | Â | Â | Â | Â | 83.6% |
p = 1 | Positive fraction | 67.8% | 87.9% | 95.3% | 100.0% | 77.3% |
| Â | Specificity | Â | Â | Â | Â | 83.3% |
Liver p = 1/2 | Number of isoforms | 6,470 | 3,390 | 661 | 62 | 10,583 |
| Â | Positive fraction | 70.0% | 89.8% | 97.1% | 100.0% | 78.2% |
| Â | Specificity | Â | Â | Â | Â | 90.3% |
p = 1 | Positive fraction | 69.5% | 89.7% | 97.1% | 100.0% | 77.9% |
| Â | Specificity | Â | Â | Â | Â | 89.8% |