Skip to main content

Advertisement

Table 3 The performance of IsoInfer and NSMAP on two RNA-Seq data of MDS samples by comparing the results with the UCSC known isoforms.

From: NSMAP: A method for spliced isoforms identification and quantification from RNA-Seq

Samples MDS 1 MDS 2
#Mapped reads 18,729,721 22,436,651
Methods IsoInfer NSMAP IsoInfer NSMAP
#Predicted isoforms 10,695 9,772 12,466 10,185
#Identified known isoforms 1,128 1,078 1,632 1,469
#Common known isoforms predicted by both methods 857 1103
Sensitivity 1.5% 1.5% 2.1% 2.0%
Precision 10.5% 11.0% 13.1% 14.4%