Table 3 The performance of IsoInfer and NSMAP on two RNA-Seq data of MDS samples by comparing the results with the UCSC known isoforms.
From: NSMAP: A method for spliced isoforms identification and quantification from RNA-Seq
Samples | MDS 1 | MDS 2 | ||
|---|---|---|---|---|
#Mapped reads | 18,729,721 | 22,436,651 | ||
Methods | IsoInfer | NSMAP | IsoInfer | NSMAP |
#Predicted isoforms | 10,695 | 9,772 | 12,466 | 10,185 |
#Identified known isoforms | 1,128 | 1,078 | 1,632 | 1,469 |
#Common known isoforms predicted by both methods | 857 | 1103 | ||
Sensitivity | 1.5% | 1.5% | 2.1% | 2.0% |
Precision | 10.5% | 11.0% | 13.1% | 14.4% |