Table 1 Real data sets
From: Efficient alignment of pyrosequencing reads for re-sequencing applications
Reference genome Source | Reference genome size | SRA accession and species | Total reads | Average read length |
|---|---|---|---|---|
S. pneumoniae ATCC 700669 [GenBank: FM211187] | ≈2.2 Mbp | ○ SRR001327 S. pneumoniae CDC1873-00 ○ SRR001328 S. pneumoniae SP195 ○ SRR001329 S. pneumoniae CDC0288-04 | 646,724 | 253 |
E. coli 0127:H6 E2348/69 [GenBank: FM180568.1] | ≈4.96 Mbp | ○ SRR000868 E. coli K-12 ○ SRR000870 E. coli K-12 ○ SRR031369 E. coli ETEC WS3080A ○ SRR031370 E. coli ETEC TW03576 | 588,397 | 263 |
P. falciparum 3D7 PlasmoDB rel 7.0 | ≈23.3 Mbp | ○ SRR006911 P. falciparum 3D7 ○ SRR006912 P. falciparum 3D7 ○ SRR006913 P. falciparum 3D7 ○ SRR006914 P. falciparum 3D7 ○ SRR006915 P. falciparum 3D7 | 203,196 | 223 |
C. elegans WormDB rel. WS210 | ≈103 Mbp | ○ SRR022943 C. elegans Lynch MA41 mutation-accumulation line derived from N2. | 3,214,353 | 103 |
D. pseudoobscura FlyBase rel. 2.14 | ≈150 Mbp | ○ SRR003807 D. pseudoobscura Flagstaff 1993 ○ SRR014458 D. pseudoobscura bogotana ER (white) ○ SRR014459 D. pseudoobscura bogotana ER (white) ○ SRR014460 D. miranda strain Mather 1993 | 834,659 | 239 |
H. sapiens Chr. 15 ENSEMBL ver. GRCh37 | ≈100 Mbp | ○ SRR014420 Human individual NA15510 ○ SRR014421 Human individual NA15510 ○ SRR014422 Human individual NA15510 ○ SRR014423 Human individual NA15510 ○ SRR014424 Human individual NA15510 ○ SRR014425 Human individual NA15510 | 3,204 | 212 |