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Figure 4 | BMC Bioinformatics

Figure 4

From: CASCADE_SCAN: mining signal transduction network from high-throughput data based on steepest descent method

Figure 4

Cell wall remodeling pathway. (A) The cell wall remodeling pathway obtained from the KEGG database. The darker nodes indicate nodes in the KEGG cell wall remodeling pathway but not detected by CASCADE_SCAN. (B) The CASCADE_SCAN output for the cell wall remodeling pathway (87% recall and 43% precision). The darker nodes indicate nodes detected by CASCADE_SCAN but not in the KEGG cell wall remodeling pathway. (PPI score threshold: 0.800, credible PPI score threshold: 0.980, DFS path length: 5, network size threshold: 30, seed proteins: MKK1, SLG1 and WSC2).

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BMC Bioinformatics

ISSN: 1471-2105

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