Skip to main content
Figure 5 | BMC Bioinformatics

Figure 5

From: CASCADE_SCAN: mining signal transduction network from high-throughput data based on steepest descent method

Figure 5

Osmolyte synthesis pathway. (A) The osmolyte synthesis pathway obtained from the KEGG database. The darker nodes indicate nodes in the KEGG osmolyte synthesis pathway but not detected by CASCADE_SCAN. (B) The CASCADE_SCAN output for the osmolyte synthesis pathway (83% recall and 67% precision). The darker nodes indicate nodes detected by CASCADE_SCAN but not in the KEGG osmolyte synthesis pathway. (PPI score threshold: 0.800, credible PPI score threshold: 0.980, DFS path length: 5, network size threshold: 30, seed proteins: MSN2, PBS2 and SLN1).

Back to article page