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Table 1 Performance comparison between different methods in precision and recall for pheromone response pathway.

From: CASCADE_SCAN: mining signal transduction network from high-throughput data based on steepest descent method

Method Precision (%) Recall (%)
CASCADE_SCAN 54 76
color-coding 83 75
NetSearch 74 70
PathFinder 88 75
ILP (λ = 0.50) 47 80
  1. The results of CASCADE_SCAN were obtained from 20 independent experiments using four seed proteins (PPI score threshold: 0.800, credible PPI score threshold: 0.980, DFS path length: 2). Note, the results of color-coding algorithm, NetSearch, PathFinder and ILP were obtained from Zhao's paper.