Table 2 Number of breakpoints recovered
From: More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs
Method | Single breakpoint | 1000-1000 | 500-1500 | 300-1500 |
|---|---|---|---|---|
Viterbi | 105/106 | 359/360 | 327/360 | 344/360 |
max ball, r = 5 | 105/106 | 360/360 | 326/360 | 350/360 |
max ball, r = 7 | 105/106 | 360/360 | 326/360 | 350/360 |
max ball, r = 10 | 105/106 | 360/360 | 326/360 | 350/360 |
max ball, r = 15 | 105/106 | 360/360 | 326/360 | 350/360 |
min region | 105/106 | 360/360 | 326/360 | 350/360 |
DualBrothers | 76/106 | 146/360 | 81/360 | 27/360 |