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Table 5 Comparison with published breakpoints

From: More accurate recombination prediction in HIV-1 using a robust decoding algorithm for HMMs

Method predicted not predicted extra breakpoints distance
Viterbi 39 33 5 17(4..54)
max ball, r = 5 41 31 5 21(6..53)
DualBrothers 22 50 19 65(37..82)
  1. For each algorithm, we report the number of published breakpoints that have been predicted by the algorithm and the number of predicted breakpoints that do not correspond to any of the published breakpoints, as well as the median distance between published and predicted breakpoints.
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BMC Bioinformatics

ISSN: 1471-2105

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