Skip to main content

Advertisement

Table 2 The maximum sequence length depending on the GPU RAM and window size parameter

From: Protein alignment algorithms with an efficient backtracking routine on multiple GPUs

window size 6 GB 4 GB 2 GB 1 GB 512 MB
16 7036 5721 3994 2751 1836
32 3518 2860 1996 1374 916
48 2345 1906 1330 915 609
64 1758 1429 997 685 455
80 1406 1143 796 547 362
96 1171 951 663 454 300
112 1003 815 567 388 255
128 877 712 495 338 221
144 779 633 439 299 194
160 701 569 394 268 172
176 637 516 358 242 155
192 583 473 327 220 139
208 538 436 301 202 126
224 499 404 278 186 115
240 465 376 259 172 105
  1. Estimated length of the sequences that can be processed by the algorithm depending on the amount of the global memory (GPU RAM) and the window size parameter.