Table 4 Posterior mean of (1-π) multiplied by K = 2,000 SNPs used in the analyses (se) obtained by BayesCπ according to the heritability (h2), number of QTL, distribution of QTL effects and training data size.
From: Extension of the bayesian alphabet for genomic selection
QTL effect distribution and training data size | |||||
|---|---|---|---|---|---|
Gamma | Normal | ||||
h 2 | No. of QTL | 1,000 | 4,000 | 1,000 | 4,000 |
0.9 | 10 | 52 (5) | 99 (9) | 73 (5) | 147 (7) |
20 | 65 (6) | 127 (11) | 112 (7) | 210 (10) | |
40 | 115 (11) | 198 (13) | 202 (19) | 343 (17) | |
0.2 | 10 | 421 (137) | 37 (5) | 532 (115) | 54 (5) |
20 | 654 (140) | 62 (8) | 917 (131) | 133 (35) | |
40 | 1006 (97) | 174 (57) | 1178 (42) | 434 (109) | |
0.03 | 10 | 1083 (80) | 933 (130) | 1045 (59) | 1081 (108) |
20 | 1162 (69) | 1103 (58) | 1035 (50) | 1099 (62) | |
40 | 1043 (83) | 1206 (42) | 1149 (54) | 1331 (39) | |