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Table 2 The four groups of bacterial species used in this study

From: Bacterial syntenies: an exact approach with gene quorum

bacteria

Bacteria

  

Acnum

Species

Mb

NbGenes

AE000512_GR

Thermotoga maritima (strain JCM 10099/DSM 3109)

1.9

1853

AE009951_GR

Fusobacterium nucleatum nucleatum (strain JCM 8532)

2.2

2069

AL009126_GR

Bacillus subtilis (strain 168)

4.2

4237

BA000022_GR

Synechocystis sp. (strain PCC 6803)

3.6

3166

U00096_GR

Escherichia coli (strain K12)

4.6

4320

AE000520_GR

Treponema pallidum (strain Nichols)

1.1

1028

AE001273_GR

Chlamydia trachomatis (strain D/UW-3/Cx)

1.0

895

AM398681_GR

Flavobacterium psychrophilum (strain JIP02/86)

2.8

2432

BX248353_GR

Corynebacterium diphtheriae (strain NCTC 13129)

2.5

2317

CP000359_GR

Deinococcus geothermalis (strain DSM 11300)

2.5

2330

proteo

Bacteria; Proteobacteria

  

acnum

Species

Mb

NbGenes

AE005673_GR

Caulobacter crescentus (strain CB15/ATCC 19089)

4.0

3738

AE016825_GR

Chromobacterium violaceum (strain IFO 12614)

4.7

4407

AE017282_GR

Methylococcus capsulatus (strain Bath/NCIMB 11132)

3.3

2960

CP000661_GR

Rhodobacter sphaeroides (strain ATCC 17025)

3.2

3111

U00096_GR

Escherichia coli (strain K12)

4.6

4320

CP000112_GR

Desulfovibrio desulfuricans (strain G20)

3.7

3775

AE001439_GR

Helicobacter pylori (strain J99)

1.6

1491

CP000251_GR

Anaeromyxobacter dehalogenans (strain 2CP-C)

5.0

4346

CP000744_GR

Pseudomonas aeruginosa (strain PA7)

6.6

6286

CP000814_GR

Campylobacter jejuni (subsp. jejuni, serovar O:6)

1.6

1626

gamma

Bacteria; Proteobacteria; Gammaproteobacteria

  

acnum

Species

Mb

NbGenes

AE017282_GR

Methylococcus capsulatus (strain Bath/NCIMB 11132)

3.3

2960

CP000127_GR

Nitrosococcus oceani (strain ATCC 19707/NCIMB 11848)

3.5

2976

CP000462_GR

Aeromonas hydrophila (subsp. hydrophila, ATCC 7966)

4.7

4122

CP000744_GR

Pseudomonas aeruginosa (strain PA7)

6.6

6286

U00096_GR

Escherichia coli (strain K12)

4.6

4320

CP000675_GR

Legionella pneumophila (strain Corby)

3.6

3204

CP000681_GR

Shewanella putrefaciens (strain CN-32/ATCC BAA-453)

4.7

3972

CP001091_GR

Actinobacillus pleuropneumoniae (serovar 7, AP6/AP76)

2.3

2131

CP001132_GR

Acidithiobacillus ferrooxidans (strain ATCC 53993)

2.9

2826

AM920689_GR

Xanthomonas campestris (pathovar campestris)

5.1

4510

enterob

Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae

  

acnum

Species

Mb

NbGenes

AE006468_GR

Salmonella typhimurium (strain ATCC 700720)

4.9

4455

AE009952_GR

Yersinia pestis (biovar Mediaevalis, strain KIM5)

4.6

4104

CP000822_GR

Citrobacter koseri (strain ATCC BAA-895)

4.7

5003

CP000964_GR

Klebsiella pneumoniae (strain 342)

5.6

5425

U00096_GR

Escherichia coli (strain K12)

4.6

4320

AE005674_GR

Shigella flexneri (serovar 2a, strain 301)

4.6

4395

AP008232_GR

Sodalis glossinidius (strain morsitans)

4.2

2432

BX470251_GR

Photorhabdus luminescens laumondii (strain TT01)

5.7

4897

BX950851_GR

Erwinia carotovora (subsp. atroseptica, ATCC BAA-672)

5.1

4491

CP000653_GR

Enterobacter sp. (strain 638)

4.5

4115

  1. Detail of the four groups of bacterial species at various phylogenetic distances used in this study. Each group is composed of 5 (first 5 lines) or 10 species. acnum: accession number in the EMBL/Genome Reviews databank; Mb: size of the genome in Mb; NbGenes: number of protein-encoding genes in the genome.