Table 6 Topological measures to discriminate between native and decoy sets - a case study on the cyclophilin-like fold
Category | Similarity (snet) | Distance (dnet) | ||||
|---|---|---|---|---|---|---|
| Â | Mean | Min | Max | Mean | Min | Max |
Random Sequences | 0.156 (0.093) | 0.032 | 0.452 | 0.880 (0.081) | 0.650 | 1.000 |
Sequences from other folds | 0.143 (0.097) | 0.000 | 0.387 | 0.880 (0.079) | 0.676 | 1.000 |
2HAQ | 0.405 (0.089) | 0.129 | 0.677 | 0.688 (0.069) | 0.486 | 0.909 |
3BO7_B | 0.390 (0.081) | 0.194 | 0.613 | 0.734 (0.060) | 0.558 | 0.880 |
3KOP_F | 0.307 (0.063) | 0.032 | 0.484 | 0.766 (0.049) | 0.639 | 0.969 |