Table 3 Likelihood ratio tests between alternative models from Table 2
From: Qxpak.5: Old mixed model solutions for new genomics problems
Test | Meaning | P-value |
|---|---|---|
1 vs. only fixed effects | QTL additive effect | 6 × 10-7 |
2 vs. 0 | QTL additive effect conditional on infinitesimal effect | 3 × 10-7 |
3 vs. 0 | QTL additive and dominance effects conditional on infinitesimal effect | 2 × 10-6 |
4 vs. 0 | QTL additive effect nested within sex conditional on infinitesimal effect | 3 × 10-8 |
5 vs. 0 | Raw association signal conditional on infinitesimal effect | 5 × 10-7 |
6 vs. 4 | Association (SNP) signal conditional on linkage (QTL) signal | 0.43 |
6 vs. 5 | Linkage signal conditional on SNP signal | 7 × 10-3 |