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Table 3 Likelihood ratio tests between alternative models from Table 2

From: Qxpak.5: Old mixed model solutions for new genomics problems

Test Meaning P-value
1 vs. only fixed effects QTL additive effect 6 × 10-7
2 vs. 0 QTL additive effect conditional on infinitesimal effect 3 × 10-7
3 vs. 0 QTL additive and dominance effects conditional on infinitesimal effect 2 × 10-6
4 vs. 0 QTL additive effect nested within sex conditional on infinitesimal effect 3 × 10-8
5 vs. 0 Raw association signal conditional on infinitesimal effect 5 × 10-7
6 vs. 4 Association (SNP) signal conditional on linkage (QTL) signal 0.43
6 vs. 5 Linkage signal conditional on SNP signal 7 × 10-3