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Table 1 Number of edges in the graph with evidence from the four information sources after applying a threshold on the relevant strength of the relationships (as defined in the Methods section)

From: Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis

COE

LIT

PPI

SEQ

Exclusive combinations

Inclusive combinations

    

N

%

N

%

✓

✓

✓

✓

9

0.04

9

0.04

✓

✓

✓

 

34

0.14

43

0.17

✓

✓

 

✓

83

0.33

92

0.37

✓

✓

  

84

0.33

210

0.83

✓

 

✓

✓

17

0.07

26

0.10

✓

 

✓

 

63

0.25

123

0.49

✓

  

✓

15

0.60

260

1.03

✓

   

9093

36.12

9534

37.88

 

✓

✓

✓

123

0.49

132

0.52

 

✓

✓

 

482

1.91

648

2.57

 

✓

 

✓

692

2.75

907

3.60

 

✓

  

4441

17.64

5948

23.63

  

✓

✓

240

0.95

389

1.55

  

✓

 

3459

13.74

4427

17.59

   

✓

6201

24.63

7516

29.86

  1. Exclusive combinations count edges where the evidence that links two nodes comes only from the sources indicated, while inclusive combinations allow the possibility of additional evidence types also supporting that link.