New methods to measure residues coevolution in proteins

BMC Bioinformatics

Table 6 Comparison of conservation method and coevolution methods based on 1JXA-A family

*conn(k)*-MI' rank	JSD rank	*conn(k)*-MIB' rank	JSD rank	*conn(k)*-MIP' rank	JSD rank	*conn(k)*-MIBP' rank	JSD rank
32	64	313	310	87	12	504	2
29	23	351	28	78	59	350	52
73	21	503	42	84	10	481	29
84	10	329	97	86	3	485	27
86	3	331	288	73	21	598	11
87	12	539	24	99	56	396	35
78	59	502	134	29	23	354	16
27	65	602	73	123	19	403	26
123	19	254	45			603	32
99	56	332	151
125	36
26	31

The column of conn(k)-name rank represents the sites with conn(k) scores in 'name' method. And the sites are presented from the high conn(k) scores to low ones. The column of JSD rank represents the corresponding JSD rank of the site.

ISSN: 1471-2105

*conn(k)*-MI' rank	JSD rank	*conn(k)*-MIB' rank	JSD rank	*conn(k)*-MIP' rank	JSD rank	*conn(k)*-MIBP' rank	JSD rank
32	64	313	310	87	12	504	2
29	23	351	28	78	59	350	52
73	21	503	42	84	10	481	29
84	10	329	97	86	3	485	27
86	3	331	288	73	21	598	11
87	12	539	24	99	56	396	35
78	59	502	134	29	23	354	16
27	65	602	73	123	19	403	26
123	19	254	45			603	32
99	56	332	151
125	36
26	31

*conn(k)*-MI' rank	JSD rank	*conn(k)*-MIB' rank	JSD rank	*conn(k)*-MIP' rank	JSD rank	*conn(k)*-MIBP' rank	JSD rank
32	64	313	310	87	12	504	2
29	23	351	28	78	59	350	52
73	21	503	42	84	10	481	29
84	10	329	97	86	3	485	27
86	3	331	288	73	21	598	11
87	12	539	24	99	56	396	35
78	59	502	134	29	23	354	16
27	65	602	73	123	19	403	26
123	19	254	45			603	32
99	56	332	151
125	36
26	31

*conn(k)*-MI' rank	JSD rank	*conn(k)*-MIB' rank	JSD rank	*conn(k)*-MIP' rank	JSD rank	*conn(k)*-MIBP' rank	JSD rank
32	64	313	310	87	12	504	2
29	23	351	28	78	59	350	52
73	21	503	42	84	10	481	29
84	10	329	97	86	3	485	27
86	3	331	288	73	21	598	11
87	12	539	24	99	56	396	35
78	59	502	134	29	23	354	16
27	65	602	73	123	19	403	26
123	19	254	45			603	32
99	56	332	151
125	36
26	31