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Table 1 Performance in found interval percentage for the read mappers on simulated D. melanogaster reads.

From: A novel and well-defined benchmarking method for second generation read mapping

  Illumina
36 bp
Illumina
50 bp
Illumina
100 bp
454
Ø 200 bp
454
Ø400 bp
Bowtie 78.5 72.2 55.0 - -
Bowtie* 78.5 72.2 59.2 - -
Bwa 92.7 93.5 93.8 - -
Shrimp2 90.1 91.1 92.8 89.7 92.9
Soap 79.6 73.1 54.7 - -
Soap* 79.8 73.1 57.5 - -
  1. Data is given for mapping in edit distance mode. 454 reads were only mapped with Shrimp2.