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Table 4 For each service, the collection of probesets with at least one mapped ACC.

From: Identifier mapping performance for integrating transcriptomics and proteomics experimental results

Service returns at least one mapped ACC

#Probesets

Affy_Q

DAVID_Q

EnV_Q

Any ACC

At least one SwissProt

No

No

No

7256

(13%)

8499

(16%)

✓

No

No

898

(2%)

533

(1%)

No

✓

No

6593

(12%)

6881

(13%)

✓

✓

No

7710

(14%)

8940

(16%)

No

No

✓

174

(0%)

134

(0%)

✓

No

✓

444

(1%)

340

(1%)

No

✓

✓

433

(1%)

352

(1%)

✓

✓

✓

31167

(57%)

28996

(53%)

TOTAL

54675

(100%)

54675

(100%)

  1. Counts are for each "Venn diagram" subset of services indicated in columns 1-3. For example, 13% of probesets return no ACC from any service; 16% return no Swissprots. Only 57% of probesets have at least one ACC returned by all three services. As was seen in the "0" column of Table 2, DAVID returns answers for 85% of probesets, 74% for NetAffx, and 59% for EnVision. 80% of ACCs are SwissProt ACCs.