Figure 10
From: Structator: fast index-based search for RNA sequence-structure patterns
Descriptors for the OxyS RNA family. (A) Secondary structure descriptor for the family of OxyS RNAs in Structator syntax. The SSD consists of RSSPs RSSP1, RSSP2, and RSSP3 describing the three stem-loop structures (HP1, HP2, and HP3, see (C)) of this small non-coding RNA. (B) RNAMotif descriptor for the same structural elements. (C) Consensus secondary structure of the OxyS RNA family as drawn by VARNA [55]. Sequence information (non-wildcard nucleotides) used in both descriptors are marked with an asterisk. Observe that both descriptors use predominantly structure and very little sequence information.