Table 2 Experiment 3 (A): Running times in seconds needed by the programs to search for 397 RSSPs describing 42 RFAM10 families in ~ 622 megabases of RNA sequence data.
From: Structator: fast index-based search for RNA sequence-structure patterns
BIDsearch | ONLsearch | RNAMotif | RNABOB |
|---|---|---|---|
46.1(1) | 6,203(134.5) | 11,745(254.7) | 9,061(196.5) |