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Table 3 Cross-validation (CV) results for dual graphs with k-NN (k = 1 to 5) and PAM

From: RAG: An update to the RNA-As-Graphs resource

Training Set (2010)

Error Rate

Dual graphs (V)

Method

(10-fold CV) [%]

3-4

1-NN

8

(25 existing and 25 missing graphs)

2-NN

6

 

3-NN

8

 

4-NN

6

 

5-NN

10

 

PAM

34

3-5

1-NN

14

(43 existing and 43 missing graphs)

2-NN

12

 

3-NN

15

 

4-NN

13

 

5-NN

14

 

PAM

26

3-6

1-NN

13

(55 existing and 55 missing graphs)

2-NN

13

 

3-NN

13

 

4-NN

13

 

5-NN

13

 

PAM

26

3-7

1-NN

13

(61 existing and 61 missing graphs)

2-NN

13

 

3-NN

13

 

4-NN

13

 

5-NN

12

 

PAM

31

3-8

1-NN

13

(64 existing and 64 missing graphs)

2-NN

14

 

3-NN

12

 

4-NN

13

 

5-NN

13

 

PAM

33

3-9

1-NN

13

(68 existing and 68 missing graphs)

2-NN

13

 

3-NN

13

 

4-NN

13

 

5-NN

12

 

PAM

36