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Table 3 References after Affinity Propagation clustering for nclusters = 12.

From: Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis

AP-family Reference    Majoritary SpolDB4 family
  SpolDB4 subfamily SIT Spoligotype pattern Family Proportion in the AP-family Total Nb
animal1(Bov1-3-Cap-Mic-Pin) bovis_1 482 Animal 0.888 206
animal2(Bov2) bovis_2 683 Animal 0.621 66
Beij-afri BEIJ 255 Afri 0.339 56
CAS CAS_1 26 CAS 0.760 96
EAI EAI_5 236 EAI 0.84 250
H1-2 H_1 47 H 0.853 68
H 3 H_3 50 H 0.874 111
LAM (9-3-11-6-4) LAM_9 42 LAM 0.721 179
T2 T_2 52 T 0.545 145
T3-LAM(2-5) LAM_2 17 LAM 0.432 148
T-(Ural-H3-LAM 10-7) ) T_1 53 T 0.823 351
S(&U) S 34 T 0.554 74
T(&U) T_1 173 T 0.420 81
X X_1 119 X 0.75 108
  1. BEIJ = Beijing (also East Asia); afri=M. africanum; CAS = Central Asia (also East Africa and India); LAM = Latino-American and Mediterranean; H = Haarlem; EAI = East African Indian. Confirmed families are shown in bold.