Skip to main content

Table 3 References after Affinity Propagation clustering for nclusters = 12.

From: Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis

AP-family

Reference

  

Majoritary SpolDB4 family

 

SpolDB4 subfamily

SIT

Spoligotype pattern

Family

Proportion in the AP-family

Total Nb

animal1(Bov1-3-Cap-Mic-Pin)

bovis_1

482

Animal

0.888

206

animal2(Bov2)

bovis_2

683

Animal

0.621

66

Beij-afri

BEIJ

255

Afri

0.339

56

CAS

CAS_1

26

CAS

0.760

96

EAI

EAI_5

236

EAI

0.84

250

H1-2

H_1

47

H

0.853

68

H 3

H_3

50

H

0.874

111

LAM (9-3-11-6-4)

LAM_9

42

LAM

0.721

179

T2

T_2

52

T

0.545

145

T3-LAM(2-5)

LAM_2

17

LAM

0.432

148

T-(Ural-H3-LAM 10-7) )

T_1

53

T

0.823

351

S(&U)

S

34

T

0.554

74

T(&U)

T_1

173

T

0.420

81

X

X_1

119

X

0.75

108

  1. BEIJ = Beijing (also East Asia); afri=M. africanum; CAS = Central Asia (also East Africa and India); LAM = Latino-American and Mediterranean; H = Haarlem; EAI = East African Indian. Confirmed families are shown in bold.