AP-subfamily naming | reference | Most represented subfamilies | Nb of spoligotype patterns | ||||
---|---|---|---|---|---|---|---|
Classical subfamily naming | SIT | spoligotype (43 format) | First most represented subfamily | Second most repr. family | |||
Subfamily | Prop. | ||||||
Afri1 | AFRI1 | 181 |
| AFRI1 | 0.531 | AFRI | 32 |
Afri2-3 | AFRI2 | 331 |
| AFRI2 | 0.364 | AFRI3 | 22 |
Beij | BEIJ | 1 |
| BEIJ | 0.842 | U | 19 |
Bov1-3 | BOV1 | 482 |
| BOV1 | 0.585 | BOV | 159 |
Bov2 | BOV2 | 683 |
| BOV2 | 0.467 | BOV | 45 |
Cap | CAP | 647 |
| CAP | 0.75 | U | 20 |
CAS | CAS1 | 26 |
| CAS1 | 0.487 | CAS | 80 |
EAI1 | EAI1 | 48 |
| EAI1 | 0.804 | U | 46 |
EAI3-5 (del2-3-37-38-39) | EAI2 | 11 |
| EAI5 | 0.383 | EAI3 | 55 |
EAI2 (del3-20-21) | EAI2 | 19 |
| EAI2 | 0.5 | U | 48 |
EAI | EAI5 | 236 |
| EAI5 | 0.651 | EAI4 | 86 |
EAI6 (del23-37) | EAI6 | 292 |
| EAI6 | 0.5 | EAI5 | 42 |
H1-2 | H1 | 47 |
| H1 | 0.790 | U | 62 |
H3 | H3 | 50 |
| H3 | 0.927 | U | 96 |
Ural | H4 | 262 |
| H4 | 0.714 | U | 28 |
LAM5-2-1(del3-13) | LAM2 | 17 |
| LAM5 | 0.207 | U | 92 |
LAM3 | LAM3 | 33 |
| LAM3 | 0.455 | U | 33 |
LAM | LAM9 | 42 |
| LAM9 | 0.574 | LAM11 | 136 |
Manu | MANU2 | 54 |
| MANU2 | 0.793 | U | 29 |
Pin-Mic | PIN | 637 |
| BOV | 0.391 | U | 23 |
S | S | 34 |
| S | 0.678 | U | 59 |
T (T1-H3-Lam10-Cam) | T1 | 53 |
| T1 | 0.828 | H3 | 261 |
T1a (del5-40-43) | T1 | 833 |
| T1 | 0.484 | U | 31 |
T1b (del21) | T1 | 291 |
| U | 0.367 | T1 | 30 |
T1c (del15) | T2 | 118 |
| T1 | 0.432 | U | 37 |
T2 (del40) | T2 | 52 |
| T2 | 0.521 | U | 119 |
T3 (del13) | T3 | 37 |
| T3 | 0.373 | U | 59 |
T4 (del19-23-24-38-39) | T4 | 39 |
| T1 | 0.406 | T4 | 32 |
T5 (del23) | T5 | 44 |
| T5 | 0.561 | U | 41 |
X | X1 | 119 |
| X1 | 0.492 | U | 61 |
X2 | X2 | 137 |
| X2 | 0.824 | T1 | 34 |
SEA1 (del29-34) | U | 458 |
| U | 0.955 | CAS | 22 |