Table 2 Excerpt of sample StralSV output "profile" file for positions 229-269 from poliovirus RdRp analysis
# | AA | ord | Rname | rnk | s/+ | d/+ | 2nd/+ | 3rd/+ | +/n | + | nv | variety |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
LSV_P: | L | 229 | 229 | 2 | 14.7 | 72 | 14.7 | 7 | 35.9 | 143 | 6 | GLIAHF |
LSV_P: | F | 230 | 230 | 1 | 81.9 | 81.9 | 5.2 | 3.2 | 38.9 | 155 | 7 | FMYVLXI |
LSV_P: | A | 231 | 231 | 2 | 19.1 | 73.9 | 19.1 | 3.2 | 39.4 | 157 | 5 | SAYDC |
LSV_P: | F | 232 | 232 | 3 | 13.2 | 54.5 | 19.1 | 13.2 | 64.6 | 257 | 8 | YTFVALDI |
LSV_P: | D | 233 | 233 | 1 | 100 | 100 | 0 | 0 | 68.3 | 272 | 1 | D |
LSV_P: | Y | 234 | 234 | 2 | 21.7 | 55.1 | 21.7 | 17.8 | 69.3 | 276 | 5 | TYVIL |
LSV_P: | T | 235 | 235 | 3 | 9.1 | 52.2 | 33 | 9.1 | 69.3 | 276 | 6 | RSTKAE |
LSV_P: | G | 236 | 236 | 4 | 8.3 | 50.4 | 17.4 | 8.3 | 69.3 | 276 | 9 | CDAGNRKQX |
LSV_P: | Y | 237 | 237 | 4 | 10.1 | 55.1 | 15.9 | 13.4 | 69.3 | 276 | 7 | FHWYCAG |
LSV_P: | D | 238 | 238 | 1 | 97.1 | 97.1 | 1.4 | 1.4 | 69.3 | 276 | 3 | DYE |
LSV_P: | A | 239 | 239 | 3 | 14.9 | 59.8 | 20.3 | 14.9 | 69.3 | 276 | 4 | STAG |
LSV_P: | S | 240 | 240 | 3 | 13.7 | 59 | 16.2 | 13.7 | 68.1 | 271 | 6 | TFSNQR |
LSV_P: | L | 241 | 241 | 4 | 7.4 | 55.7 | 16.2 | 8.1 | 68.1 | 271 | 8 | VWILQHMC |
LSV_P: | S | 242 | 242 | 3 | 8.8 | 60.4 | 16.1 | 8.8 | 68.6 | 273 | 8 | TPSQCHKN |
LSV_P: | P | 243 | 243 | 3 | 13.4 | 51.3 | 15.9 | 13.4 | 69.6 | 277 | 7 | EGPRSQW |
LSV_P: | A | 244 | 244 | 3 | 12.6 | 42.2 | 16.3 | 12.6 | 67.8 | 270 | 12 | NWASRDPIVKCQ |
LSV_P: | W | 245 | 245 | 3 | 10.9 | 55.5 | 17.5 | 10.9 | 68.8 | 274 | 7 | DLWVAFH |
LSV_P: | F | 246 | 246 | 4 | 10.7 | 49.8 | 19.2 | 11.4 | 70.6 | 281 | 8 | IRLFMVCT |
LSV_P: | E | 247 | 247 | 5 | 6.4 | 51.6 | 15.7 | 7.8 | 70.6 | 281 | 10 | RDKAEQNSVH |
LSV_P: | A | 248 | 248 | 3 | 15.7 | 48 | 21 | 15.7 | 70.6 | 281 | 9 | VLATIGCNH |
LSV_P: | L | 249 | 249 | 3 | 10.7 | 51.6 | 25.6 | 10.7 | 70.6 | 281 | 6 | EILAMS |
LSV_P: | K | 250 | 250 | 3 | 7.5 | 54.1 | 10.9 | 7.5 | 66.8 | 266 | 10 | ECKLGIMFQA |
LSV_P: | M | 251 | 251 | 2 | 13 | 60.3 | 13 | 9.2 | 60.1 | 239 | 8 | SMDEAKXY |
LSV_P: | V | 252 | 252 | 2 | 12.1 | 75.3 | 12.1 | 4 | 56 | 223 | 7 | IVGAEYL |
LSV_P: | L | 253 | 253 | 2 | 23.3 | 62.8 | 23.3 | 6.3 | 56 | 223 | 5 | YLMIQ |
LSV_P: | E | 254 | 254 | 2 | 10.7 | 65.1 | 10.7 | 7.4 | 54 | 215 | 10 | QEDVLKATYH |
LSV_P: | K | 255 | 255 | 2 | 16.3 | 63.4 | 16.3 | 5.9 | 50.8 | 202 | 10 | CKANYTRIDE |
LSV_P: | I | 256 | 256 | 4 | 9.9 | 60.3 | 12.1 | 11.3 | 35.4 | 141 | 7 | CLFIYGR |
LSV_P: | G | 257 | 257 | 2 | 39.2 | 45.1 | 39.2 | 13.7 | 12.8 | 51 | 4 | SGYD |
LSV_P: | F | 258 | 258 | 1 | 85.7 | 85.7 | 14.3 | 0 | 5.3 | 21 | 2 | FY |
LSV_P: | G | 259 | 259 | 1 | 100 | 100 | 0 | 0 | 3.5 | 14 | 1 | G |
LSV_P: | D | 260 | 260 | 1 | 77.8 | 77.8 | 11.1 | 11.1 | 4.5 | 18 | 3 | DAN |
LSV_P: | R | 261 | 261 | 1 | 77.8 | 77.8 | 11.1 | 11.1 | 4.5 | 18 | 3 | RMG |
LSV_P: | V | 262 | 262 | 1 | 56.1 | 56.1 | 15.9 | 8.5 | 20.6 | 82 | 8 | VQSPKTIR |
LSV_P: | D | 263 | 263 | 2 | 14 | 32 | 14 | 13 | 25.1 | 100 | 10 | KDVQWNTCAS |
LSV_P: | Y | 264 | 264 | 2 | 16.2 | 41.9 | 16.2 | 12.4 | 26.4 | 105 | 8 | LYVITAFH |
LSV_P: | I | 265 | 265 | 1 | 32.7 | 32.7 | 28.3 | 11.5 | 28.4 | 113 | 7 | IFALQTP |
LSV_P: | D | 266 | 266 | 2 | 23 | 44.2 | 23 | 8.8 | 28.4 | 113 | 9 | EDIKNVASQ |
LSV_P: | Y | 267 | 267 | 2 | 15.3 | 37.8 | 15.3 | 14.4 | 27.9 | 111 | 9 | TYDNRHLAS |
LSV_P: | L | 268 | 268 | 1 | 57.3 | 57.3 | 28.2 | 4.5 | 27.6 | 110 | 8 | LSMHVIYX |
LSV_P: | N | 269 | 269 | 4 | 12.6 | 36.9 | 14.6 | 12.6 | 25.9 | 103 | 9 | LCVNMTISQ |