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Table 2 Average AUC values for ABI, AG1, GEH, and ILM data

From: Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Technology TAQ TAQ TAQ TAQ GEX GEX GEX GEX
Comparison AB AB CD CD AB AB CD CD
Metric FDR AD FDR AD FDR AD FDR AD
#DEGs 817 553 767 351 144 106 114 60
ABI         
WAD 66.18 74.77 67.30 77.46 70.71 74.49 70.01 76.62
AD 63.45 75.49 62.88 78.92 65.33 71.14 61.86 71.10
FC 62.93 75.00 62.27 78.63 64.95 70.76 60.84 70.42
RP 62.46 75.45 60.28 79.58 64.17 70.43 58.37 68.82
modT 66.03 73.63 67.62 76.75 71.27 74.84 70.54 77.31
samT 64.00 75.63 63.80 79.23 66.36 71.92 63.34 72.57
shrT 65.60 74.91 66.86 78.05 69.75 74.12 68.80 76.54
ibmT 66.37 73.43 67.93 76.41 71.99 75.26 71.12 77.39
AG1         
WAD 66.73 73.14 67.39 74.69 71.28 75.58 72.67 77.80
AD 64.60 75.20 64.41 78.48 65.73 73.53 65.75 75.65
FC 64.32 75.15 63.01 77.55 65.42 73.58 63.98 73.95
RP 64.37 75.20 65.03 79.35 65.38 72.78 66.45 76.02
modT 65.66 74.25 66.00 76.42 68.80 74.78 70.44 77.75
samT 64.26 74.29 64.77 78.66 66.34 73.79 66.49 76.24
shrT 65.47 74.78 65.67 77.76 68.01 74.65 69.19 77.89
ibmT 65.97 74.32 66.34 76.59 69.80 75.61 71.22 78.86
GEH         
WAD 74.03 78.39 74.64 79.38 76.18 79.19 76.87 81.26
AD 71.27 78.60 71.24 80.36 70.50 75.64 70.09 77.28
FC 71.16 78.50 70.81 80.21 70.30 75.48 69.84 77.05
RP 71.19 78.68 70.97 80.62 70.58 75.71 69.93 77.54
modT 71.90 78.04 71.74 79.01 71.18 75.46 72.25 78.26
samT 71.40 78.66 71.54 80.48 70.61 75.69 70.72 77.76
shrT 72.02 78.64 72.12 80.13 71.30 75.89 72.19 78.63
ibmT 71.87 78.01 71.70 78.99 71.14 75.41 72.27 78.31
ILM         
WAD 79.13 82.49 78.94 82.63 83.25 84.79 82.09 83.88
AD 77.43 83.85 76.33 84.64 79.92 83.71 77.93 82.93
FC 77.39 83.83 76.35 84.63 79.90 83.77 78.14 83.17
RP 77.58 84.23 76.10 85.28 79.81 83.94 77.97 84.13
modT 77.45 82.98 76.73 83.56 80.64 83.78 78.70 82.96
samT 77.42 83.63 76.53 84.39 80.08 83.70 78.28 83.02
shrT 77.39 83.05 76.72 83.58 80.49 83.73 78.64 82.93
ibmT 77.94 82.96 77.53 83.48 81.37 84.04 79.77 83.31
  1. Average AUC values across three test sites. Reminder of legend is the same as in Table 1.