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Table 4 Inter-site reproducibility at lower DEG list level

From: Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Comparison

AB

AB

AB

AB

AB

CD

CD

CD

CD

CD

Platform

AFX

ABI

AG1

GEH

ILM

AFX

ABI

AG1

GEH

ILM

WAD

88

86

85

81

83

64

76

54

39

66

AD

76

76

73

81

85

23

11

2

5

18

FC

77

72

59

78

84

23

0

0

3

19

RP

78

72

76

79

78

20

8

2

7

9

modT

16

26

30

8

27

20

26

3

1

13

samT

71

63

42

73

45

32

31

5

10

21

shrT

17

33

43

23

28

21

40

2

1

12

ibmT

21

32

37

6

28

29

39

10

1

22

  1. POG values for 100 top-ranked genes among three test sites. For AFX data, POG values were calculated based on first three test sites.
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BMC Bioinformatics

ISSN: 1471-2105

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