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Table 4 Inter-site reproducibility at lower DEG list level

From: Evaluating methods for ranking differentially expressed genes applied to microArray quality control data

Comparison AB AB AB AB AB CD CD CD CD CD
Platform AFX ABI AG1 GEH ILM AFX ABI AG1 GEH ILM
WAD 88 86 85 81 83 64 76 54 39 66
AD 76 76 73 81 85 23 11 2 5 18
FC 77 72 59 78 84 23 0 0 3 19
RP 78 72 76 79 78 20 8 2 7 9
modT 16 26 30 8 27 20 26 3 1 13
samT 71 63 42 73 45 32 31 5 10 21
shrT 17 33 43 23 28 21 40 2 1 12
ibmT 21 32 37 6 28 29 39 10 1 22
  1. POG values for 100 top-ranked genes among three test sites. For AFX data, POG values were calculated based on first three test sites.