NeurphologyJ: An automatic neuronal morphology quantification method and its application in pharmacological discovery

Table 1 Free, open-source neurite quantification software packages for quantifying large volume of 2D fluorescence images

Name	Operation Mode	Morphology Measurements	Platform
NeuronMetrics [10]	Semi-automatic	Neurite length	ImageJ
		Soma number
		Neurite complexity
NeuriteIQ [13]	Automatic	Neurite length	Matlab
		Soma number and size
NeuriteTracer [14]	Automatic	Neurite length	ImageJ
		Soma number
NeuronCyto [15]	Automatic	Neurite length	Matlab
		Soma number and size
		Neurite complexity
NeurphologyJ	Automatic	Neurite length	ImageJ
		Soma number and size
		Neurite attachment points
		Neurite ending points

ISSN: 1471-2105