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Table 1 Free, open-source neurite quantification software packages for quantifying large volume of 2D fluorescence images

From: NeurphologyJ: An automatic neuronal morphology quantification method and its application in pharmacological discovery

Name Operation Mode Morphology Measurements Platform
NeuronMetrics [10] Semi-automatic Neurite length ImageJ
   Soma number  
   Neurite complexity  
NeuriteIQ [13] Automatic Neurite length Matlab
   Soma number and size  
NeuriteTracer [14] Automatic Neurite length ImageJ
   Soma number  
NeuronCyto [15] Automatic Neurite length Matlab
   Soma number and size  
   Neurite complexity  
NeurphologyJ Automatic Neurite length ImageJ
   Soma number and size  
   Neurite attachment points  
   Neurite ending points  
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BMC Bioinformatics

ISSN: 1471-2105

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