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Table 2 Comparisons between the two automatic ImageJ-based methods NeurphologyJ and NeuriteTracer

From: NeurphologyJ: An automatic neuronal morphology quantification method and its application in pharmacological discovery

Measurements (Function, speed, and accuracy)

NeuriteTracer

NeurphologyJ

Neurite length

Yes

Yes

Soma number

Yes

Yes

Soma size

No

Yes

Attachment point

No

Yes

Ending point

No

Yes

Image for analysis

Pair of images

Single image

No. of Images in one batch

Limited by memory

Unlimited

Analysis speed per image

2.1 sec

1.7 sec

Correlation coefficient/p-value* (primary neurons)

0.97/<0.0001

0.97/0.2696

Correlation coefficient/p-value* (P19 neurons)

0.97/0.0025

0.99/0.5678

  1. * Manual tracings using NeuronJ are used as gold standard for calculating correlation coefficient and p-value.