PI: An open-source software package for validation of the SEQUEST result and visualization of mass spectrum

BMC Bioinformatics

Table 1 The performance of PI and SEQUEST on different data sets, i

Data Set	PI FPR 0.5%	SEQUEST FPR 0.5%	PI FPR 1%	SEQUEST FPR 1%
Comp12vs12standSCX_LCQ	9321	7915	9546	8835
StrepPyogenes_OGE_LTQ	12877	8565	13559	10699
StrepPyogenes_FFE2_LTQFT	3820	2956	3866	3766
Gygi LTQ	10322	8431	10751	9697

ISSN: 1471-2105