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Table 3 The maximum and optimal F1 scores of the pairwise peak alignment.

From: Smith-Waterman peak alignment for comprehensive two-dimensional gas chromatography-mass spectrometry

   

SW-based methods

   
  

SWRM

SWRE

SWRME

DISCO

Optimal version LS

 

Compound

standards

0.9455

(0.0047)

0.9457

(0.0048)

0.9461

(0.0047)

0.8777

(0.0055)

0.9449

(0.0048)

Homogeneous

Spiked-in

0.5512

(0.0236)

0.5526

(0.0184)

0.5404

(0.0320)

0.4821

(0.0121)

0.4437

(0.0130)

Heterogeneous

Compound

standards

0.8937

(0.0032)

0.8945

(0.0036)

0.8937

(0.0035)

0.7505

(0.0057)

0.8894

(0.0045)

  1. The maximum F1 scores are estimated for three proposed SW-based methods (SWRM, SWRE, and SWRME) and DISCO, and the optimal F1 scores for the optimal version (LS) of the proposed SW-based methods on two homogeneous and one heterogeneous data. The values in parentheses are standard errors.