Table 2 Evaluation on the phylogenetic footprinting datasets from fungal genomes using the predictions in the yeast genome
From: MotifClick: prediction of cis-regulatory binding sites via merging cliques
| Â | Â | Top 1 | Top 5 | Top 10 | Top 15 | Top 20 |
|---|---|---|---|---|---|---|
MotifClick | BS (MF) | 585 (67) | 1200 (85) | 1638 (92) | 1923 (95) | 2107 (95) |
| Â | PS (lbSp) | 7158 (0.081) | 24916 (0.048) | 41752 (0.039) | 55084 (0.035) | 65852 (0.032) |
MEME | BS (MF) | 754 (70) | 1202 (85) | 1615 (87) | 1931 (92) | 2087 (95) |
| Â | PS (lbSp) | 10107 (0.074) | 34010 (0.035) | 49958 (0.032) | 60805 (0.031) | 69709 (0.030) |
MotifCut | BS (MF) | 474 (65) | 1189 (85) | 1641 (86) | 1893 (93) | 1983 (95) |
| Â | PS (lbSp) | 7632 (0.062) | 28074 (0.041) | 47583 (0.034) | 61107 (0.031) | 67017 (0.030) |
BioProspecter | BS (MF) | 780 (79) | 1145 (84) | 1465 (86) | 1701 (89) | 1911 (92) |
| Â | PS (lbSp) | 10049 (0.078) | 20418 (0.056) | 31935 (0.046) | 42305 (0.040) | 52296 (0.037) |
Weeder | BS (MF) | 969 (77) | 1698 (88) | 2063 (92) | 2255 (94) | 2396 (94) |
| Â | PS (lbSp) | 23417 (0.041) | 56440 (0.030) | 81374 (0.025) | 96046 (0.023) | 106872 (0.022) |
WeederH | BS (MF) | 404 (64) | 1154 (79) | 1614 (89) | 1905 (91) | 2129 (94) |
| Â | PS (lbSp) | 5092 (0.079) | 25363 (0.045) | 49929 (0.032) | 74180 (0.026) | 97300 (0.022) |
FootPrinter | BS (MF) | 452 (66) | 1148 (78) | 1579 (86) | 1854 (91) | 2073 (94) |
| Â | PS (lbSp) | 6173 (0.073) | 27451 (0.042) | 48533 (0.033) | 77249 (0.024) | 86437 (0.024) |