Software package
|
Graph Properties
|
#of models
|
Graphlets
|
Visualization
|
Clustering
|
GNA
|
---|
GraphCrunch 2
|
Yes
|
7
|
Yes
|
Yes (Results)
|
Yes
|
Yes
|
GraphCrunch
|
Yes
|
5
|
Yes
|
Yes (Results)
|
No
|
No
|
Cytoscape
|
Yes
|
6
|
Limited
|
Yes
|
Yes
|
No
|
Visant
|
Yes
|
1
|
No
|
Yes
|
No
|
No
|
mFinder
|
No
|
3
|
No
|
Yes (mDraw)
|
No
|
No
|
MAVisto
|
No
|
1
|
No
|
Yes
|
No
|
No
|
FANMOD
|
No
|
3
|
No
|
Yes
|
No
|
No
|
tYNA
|
Yes
|
0
|
No
|
Yes
|
No
|
No
|
pajek
|
Yes
|
2
|
No
|
Yes
|
Yes
|
No
|
IsoRank
|
No
|
0
|
No
|
No
|
No
|
Yes
|
Graemlin
|
No
|
0
|
No
|
No
|
No
|
Yes
|
GraphM
|
No
|
0
|
No
|
No
|
No
|
Yes
|
- The "Graph Properties" column contains "Yes" if the package can compute at least the average diameter and clustering coefficient. The "# models" column corresponds to the number of random network model families supported by the package. The "Graphlets" column contains "Yes" if the package can count all graphlets and orbits in the network with up to 5 nodes and if it can compute signature similarities. The "Visualization" column contains "Yes" if the package is able to visualize graphs (graph drawing) or results (statistics). The "Clustering" and "GNA" Columns indicate whether the package supports clustering and Global Network Alignment (GNA), respectively.