Skip to main content
Figure 11 | BMC Bioinformatics

Figure 11

From: PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus genome

Figure 11

NS2 PhyloMap excluding Group B. (A) The PhyloMap for 1471 NS2 protein sequences excluding Group B. Each spot in the plot corresponds to one sequence, and the first two dimensions represent 38.7% of the total variation. The phylogenetic tree mapped onto the plot is shown in (B). The mapping error is 0.00427. The strain names that stand for the numbers in the plot are shown in the phylogenetic tree in (B). (B) The NJ tree of NS2 protein sequences excluding Group B built using distances inferred by the JTT model, 40 sequences have been selected by PhyloMap as data centers, the other 2 sequences (in bold italics) have been added manually. This tree has been mapped onto the PCoA result as shown in (A). Bootstrap values (1000 replications) for key nodes are shown.

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us