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Table 2 Comparision of prediction performance of BEOracle with BCPred and Bepipred on peptide antibodies used in modENCODE project

From: Determinants of antigenicity and specificity in immune response for protein sequences

modENCODE BEOracle BCPred Bepipred
Rabbit anti-Stat92E 1 1 0
HDAC6-497 1 1 0
HDAC3-499 1 0 0
HDAC1-501 1 0 1
Egg (Kang) 1 1 0
chinmo 70850 1 0 1
CP190 1 0 0
CTCF-C 1 0 0
sens 1 1 1
HP1 wa191 1 1 0
CTCF-N 0 1 1
HP1 wa192 1 1 1
HDAC4a-492 1 0 1
HA 1 0 1
HDAC1-500 1 1 1
HP1c (Henikoff) 1 1 0
HDAC6-496 1 1 1
HDAC3-498 1 0 1
HDAC11-495 1 1 1
JL00012_DPY28 1 1 1
POF 1 1 1
BEAF-32 1 0 0
HDAC11-494 1 1 0
HDAC4a-493 1 0 0
anti-HTZ-1 1 1 1
HP1b (Henikoff) 1 1 1