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Table 3 CE RDF statement examples

From: Semantic inference using chemogenomics data for drug discovery

RDF Statements Explanation
wo:ctdcid9681 rdf:type wo:ChemicalCompound.
wo:querycmpd wo:isSimilarTo wo:ctdcid9681;
wo:hasSimilarity "1.000".
wo:ctdcid9681 wo:hasName "Methysergide".
wo:HTR1B rdf:type wo:Gene;
wo:isrelatedTo wo:cid9681;
wo:isInferredFrom "pubmedid8743744".
wo:Autistic_Disorder rdf:type wo:Disease;
wo:isAssociatedWith wo:HTR1B;
wo:isInferredFrom "pubmedid19038234".
A Methysergide-Autistic Disorder relationship is inferred via rule 2 (gene HTR1B). The similar compound (cid = 9681) is Methysergide itself with similarity = 1, it co-occurs with gene HTR1B in a same paper (pubmed id = 8743744), and HTR1B and Autistic_Disorder are co-occurring in another same paper (pubmed id = 19038234). Then we use rule 2 to establish such relations;
wo:ctdcid11865408 rdf:type wo:ChemicalCompound.
wo:querycmpd wo:isSimilarTo wo:ctdcid11865408;
wo:hasSimilarity "0.774".
wo:ctdcid11865408 wo:hasName "Metergoline".
wo:HTR1B rdf:type wo:Gene;
wo:isrelatedTo wo:cid11865408;
wo:isInferredFrom "pubmedid1330643".
wo:Autistic_Disorder rdf:type wo:Disease;
wo:isAssociatedWith wo:HTR1B;
wo:isInferredFrom "pubmedid19038234".
A Methysergide-Autistic Disorder relationship is also inferred via rule 2 (again via HTR1B). Although this is the same relationship, a different evidence path considered (we will do path ranking on these evidence paths later);
wo:cid5486180 rdf:type wo:ChemicalCompound.
wo:querycmpd wo:isSimilarTo wo:cid5486180;
wo:hasSimilarity "0.929".
wo:cid5486180 wo:isActiveIn wo:aid410.
wo:aid410 rdf:type wo:BioAssay;
wo:hasName "p450-cyp1a2".
wo:CYP1A2 rdf:type wo:Gene.
wo:aid410 wo:hasGene wo:CYP1A2.
wo:CYP1A2 wo:isAssociatedWith wo:Lymphoma.
wo:Lymphoma rdf:type wo:Disease.
A Methysergide-Lymphoma relationship is inferred by rule1 (via CYP1A2).