Table 1 Representative classes considered in this study.
From: Predicting functionally important SNP classes based on negative selection
class name | number of SNPs | size of region (kb) | SNP frequency (SNPs/kb) |
|---|---|---|---|
coding | 132,562 | 34,215 | 3.87 |
promoter | 104,439 | 24,844 | 4.20 |
splice site | 41,932 | 11,621 | 3.61 |
constrained elements | 152,158 | 71,977 | 2.11 |
regulatory features core | 260,919 | 64,296 | 4.06 |
regulatory features extended | 558,932 | 136,134 | 4.11 |
cisRED | 9,491 | 2,815 | 3.37 |
miRanda | 3,975 | 884 | 4.50 |
non-coding RNA genes | 1,832 | 490 | 3.74 |
ancestral repeats | 44,243 | 13,011 | 3.40 |
genome | 11,307,522 | 3,022,647 | 3.74 |