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Table 1 Representative classes considered in this study.

From: Predicting functionally important SNP classes based on negative selection

class name number of SNPs size of region (kb) SNP frequency (SNPs/kb)
coding 132,562 34,215 3.87
promoter 104,439 24,844 4.20
splice site 41,932 11,621 3.61
constrained elements 152,158 71,977 2.11
regulatory features core 260,919 64,296 4.06
regulatory features extended 558,932 136,134 4.11
cisRED 9,491 2,815 3.37
miRanda 3,975 884 4.50
non-coding RNA genes 1,832 490 3.74
ancestral repeats 44,243 13,011 3.40
genome 11,307,522 3,022,647 3.74
  1. SNP counts shown are for all SNPs in Ensembl.