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Table 2 Running times on RDP dataset

From: DNACLUST: accurate and efficient clustering of phylogenetic marker genes

 

0.99

0.97

0.95

DNACLUST exact

204

372

960

UCLUST exact

 

7800

5040

DNACLUST inexact

74

76

150

UCLUST inexact

43

29

16

  1. The running times (minutes) of DNACLUST and UCLUST with various similarity thresholds on the RDP dataset.
  2. The running times were measured on a single 2.8GHz processor of an AMD64 Linux workstation. The command line options were:
  3. dnaclust infile.fasta -l -s 0.9x -k 5 [--approximate-filter] > outfile.cluster uclust --input infile-sorted.fasta --uc outfile.cluster --id 0.9x [--exact]