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Table 3 List of positively selected genes that intersect DivE's predicted accelerated regions.

From: Detection of lineage-specific evolutionary changes among primate species

Gene symbol Gene full name Encode region Subtree
under
selection
No. of orthologous sequences P-value
SERPINB7 serpin peptidase inhibitor, clade B (ovalbumin), member 7 ENr122 new world monkeys 13 <.0001
SLC22A4 solute carrier family 22 (organic cation/ergothioneine transporter), member 4 ENm002 orangutan 14 <.0001
UGT1A8 UDP glucuronosyltransferase 1 family, polypeptide A8 ENr131 baboon 7 <.0001
LILRA4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 4 ENm007 human-orangutan 6 <.0001
APOA4 apolipoprotein A-IV ENm003 macaque 13 <.0001
HBQ1 hemoglobin, theta 1 ENm008 chimp 14 <.0001
F7 coagulation factor VII (serum prothrombin conversion accelerator) ENr132 macaque 11 <.0001
C21orf13
(LCA5L)
Leber congenital amaurosis 5-like ENr133 mouse lemur 13 0.0004
CGN cingulin ENr231 dusky titi 13 0.0004
LILRB4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4 ENm007 vervet-baboon 6 0.0007
AC006985.5
(HEATR7B1)
HEAT repeat containing 7B1 ENr131 prosimians 9 0.0007
ARHGDIG Rho GDP dissociation inhibitor (GDI) gamma ENm008 simians 10 0.0017
F8 coagulation factor VIII, procoagulant component ENm006 owl monkey 10 0.0026
SYT8 synaptotagmin VIII ENm011 new world monkeys 8 0.0030
C22orf30 (PRR14L) proline rich 14-like ENm004 simians 12 0.0039
HBZ hemoglobin, zeta ENm008 macaque 4 0.0043
LILRB5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5 ENm007 macaque 3 0.0068
DEPDC5 DEP domain containing 5 ENm004 human-colobus monkey 12 0.007
RPS9 ribosomal protein S9 ENm007 human-colobus monkey 13 0.0227
DDX43 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 ENr223 new world monkeys 12 0.0246
  1. Positive selection was determined with the codeml program from the PAML package. The first column gives the ENCODE gene symbol followed in parentheses by the corresponding Genbank gene symbol (if different). The fourth column in the table shows the name of the subtree predicted to be accelerated by DivE. If there are multiple species in the selected tree, the clade is specified by the two species whose most common ancestor form the clade's root, or by the clade's name as specified in Figure 1.