TY - JOUR AU - Liu, Shiyong AU - Vakser, Ilya A. PY - 2011 DA - 2011/07/11 TI - DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking JO - BMC Bioinformatics SP - 280 VL - 12 IS - 1 AB - Computational approaches to protein-protein docking typically include scoring aimed at improving the rank of the near-native structure relative to the false-positive matches. Knowledge-based potentials improve modeling of protein complexes by taking advantage of the rapidly increasing amount of experimentally derived information on protein-protein association. An essential element of knowledge-based potentials is defining the reference state for an optimal description of the residue-residue (or atom-atom) pairs in the non-interaction state. SN - 1471-2105 UR - https://doi.org/10.1186/1471-2105-12-280 DO - 10.1186/1471-2105-12-280 ID - Liu2011 ER -