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Figure 3 | BMC Bioinformatics

Figure 3

From: DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking

Figure 3

Test on ZRANK and RosettaDock decoys. DECK versions 1 and 2 are based on the reference state 5, and trained on set 1 and 2, correspondingly. The success rate was calculated as the percentage of complexes with at least one hit ranked in top N predictions. The definition of the hit is according to the test. (A) Test on ZRANK docking decoys. A hit is defined as a match with interface RMSD <2.5 Å. The ZRANK score and RMSD values were taken from the score file included with the decoys. (B) Test on RosettaDock decoys, with a hit defined as a match with ligand RMSD <5 Å, and (C) with a hit defined as a match with ligand RMSD <10 Å. The RosettaDock scores and RMSD values were taken from the score file included with RosettaDock decoys. DCOMPLEX and ZRANK scores were calculated locally.

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