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Table 1 Performance of CAMBa at various thresholds on the Rice and Wheat data sets

From: Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments

Rice Wheat
F ( t ) Pred Conf FP FN Sens Spec F ( t ) Pred Conf FP FN Sens Spec
0 308 11 233 0 100.00 98.71 -10 310 37 208 5 95.33 95.44
1 131 11 56 0 100.00 99.69 -5 172 36 73 8 92.52 98.40
2 75 10 7 7 90.67 99.96 0 107 36 8 8 92.52 99.82
3 54 10 0 21 72.00 100.00 5 92 33 1 16 85.05 99.98
4 46 9 0 29 61.33 100.00 10 81 31 0 26 75.70 100.00
5 40 7 0 35 53.33 100.00 15 59 21 1 49 54.21 99.98
  1. Performance of CAMBa at various thresholds on the Rice (left) and Wheat data sets. F(t) = CAMBa threshold, Pred = # predicted mutations at that threshold, Conf = # of the predicted mutations which overlap with the confirmed mutations (11 in rice and 39 in wheat), FP = # false positives, FN = # false negatives, Sens = Sensitivity, Spec = Specificity. We underscore the line associated with the recommended number of predictions for both Rice and Wheat. We restrict our estimate of the number of False Positives to be at least 0.