Table 2 Performance comparison of CAMBa to other methods using default parameters on Rice and Wheat
From: Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments
| Â | Rice | Wheat | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Method | Pred | Conf | FP | FN | Sens | Spec | Pred | Conf | FP | FN | Sens | Spec |
CAMBa | 75 | 10 | 7 | 7 | 90.67 | 99.96 | 107 | 36 | 8 | 8 | 92.52 | 99.82 |
Outlier | 75 | 8 | 20 | 20 | 73.33 | 99.89 | 107 | 36 | 8 | 8 | 92.52 | 99.82 |
CRISP | 0 | 0 | 0 | 75 | 0.00 | 100.00 | 121 | 32 | 33 | 19 | 82.24 | 99.28 |
VarScan | 3 | 0 | 3 | 75 | 0.00 | 99.98 | 30 | 10 | 3 | 80 | 25.23 | 99.93 |
ComSeq | 9599 | 10 | 9531 | 7 | 90.67 | 47.15 | 154 | 36 | 55 | 8 | 92.52 | 98.79 |
Poisson | 6889 | 8 | 6834 | 20 | 73.33 | 62.10 | 218 | 35 | 122 | 11 | 89.72 | 97.33 |