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Table 4 Performance comparison of CAMBa to other methods using default parameters on Rice with lowered variance

From: Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments

Method Rice with lowered variance
  Pred Conf FP FN Sens Spec
CAMBa 73 10 9 6 91.43 99.95
Outlier 73 10 9 6 91.43 99.95
CRISP 0 0 0 70 0.00 100.00
VarScan 3 0 3 70 0.00 99.98
ComSeq 8106 10 8042 6 91.43 51.25
Poisson 6247 8 6196 19 72.86 62.44
  1. Performance comparison of CAMBa to other methods using default parameters, on the Rice data set, after excluding HLP1 to lower the mean coverage variance. The column abbreviations are as in Table 1. All methods are evaluated on their ability to predict the carrier of each candidate mutation, except CRISP, which cannot make such predictions.