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Table 4 Performance comparison of CAMBa to other methods using default parameters on Rice with lowered variance

From: Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments

Method

Rice with lowered variance

 

Pred

Conf

FP

FN

Sens

Spec

CAMBa

73

10

9

6

91.43

99.95

Outlier

73

10

9

6

91.43

99.95

CRISP

0

0

0

70

0.00

100.00

VarScan

3

0

3

70

0.00

99.98

ComSeq

8106

10

8042

6

91.43

51.25

Poisson

6247

8

6196

19

72.86

62.44

  1. Performance comparison of CAMBa to other methods using default parameters, on the Rice data set, after excluding HLP1 to lower the mean coverage variance. The column abbreviations are as in Table 1. All methods are evaluated on their ability to predict the carrier of each candidate mutation, except CRISP, which cannot make such predictions.