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Table 1 DS_DMEL - Data for putative and known networks obtained with Bio::Homology::InterologWalk

From: Bio::Homology::InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping

 

DS_DMELPipeline

 

Putative

Known

Datasets

Gene IDs

14869

14869

Reference Genomes

52

NA

Orthologues (Forward)

150968

NA

PPIs in Reference Genomes

37931

NA

Total Interactions

11316

51827

Unique PP Pairs

4428

26622

Surviving IDs (% Gene IDs)

2188 (14.7)

7779 (52.3)

Networks

Nodes

2188

7779

Edges

4428

26622

  1. The table shows a comparison of the PPI datasets and networks obtained for the Drosophila melanogaster interactome dataset (DS_DMEL). Results obtained using the two available
  2. Bio::Homology::InterologWalk pipelines - putative and experimental - are shown. In the putative pipeline, the data shown are relative to interactions obtained through interolog mapping. In the experimental pipeline, the initial dataset has been queried against EBI Intact to gather all known, experimental molecular associations available. The field 'Total Interactions' indicates the total number of final entries of the form I = (gene x , gene y ) obtained. Since I can be observed several times through different orthology paths, the field Unique PP Pairs shows the number of unique (gene x , gene y ) pairs observed.