Data Set | Source | Accession Number | Technology Characteristics | Notes | References |
---|---|---|---|---|---|
MAQC data set | Sequence Read Archive | SRX016366, SRX016368-SRX016372 | Standard Illumina RNA-Seq protocol: RNA fragmentation, random hexamer priming | expression data also available from Taqman RT-PCR and QuantiGene platforms | [22] |
RNA-Seq data from kidney and liver | Sequence Read Archive | SRX000571 SRX000605 | Standard Illumina RNA-Seq protocol: RNA fragmentation, random hexamer priming | read counts per gene available from http://bioinf.wehi.edu.au/resources/ | [7] |
Yeast RNA-Seq data | Sequence Read Archive | SRR014335 SRR014336 | Standard Illumina RNA-Seq protocol: RNA fragmentation, random hexamer priming | NA | [25] |
Yeast RNA-Seq data using alternative protocols | Sequence Read Archive | SRR002058 SRR002062 | random hexamer or oligo-dT priming; cDNA fragmentation by DNase I | NA | [26] |
FRT-Seq data | European Nucleotide Archive | ERR007689 ERR007710 | standard protocol or FRT-Seq (no PCR, RT step on flow cell) | read counts per gene available from ftp://ftp.sanger.ac.uk/pub/transseq/ | [27] |