TY - JOUR AU - Levine, M. AU - Tjian, R. PY - 2003 DA - 2003// TI - Transcription regulation and animal diversity JO - Nature VL - 424 UR - https://doi.org/10.1038/nature01763 DO - 10.1038/nature01763 ID - Levine2003 ER - TY - JOUR AU - Stolovitzky, G. AU - Monroe, D. AU - Califano, A. PY - 2007 DA - 2007// TI - Dialogue on Reverse-Engineering Assessment and Methods: The DREAM of High-throughput pathway inference JO - Annals of the New York Academy of Sciences VL - 1115 UR - https://doi.org/10.1196/annals.1407.021 DO - 10.1196/annals.1407.021 ID - Stolovitzky2007 ER - TY - JOUR AU - Albert, R. AU - Othmer, H. G. PY - 2003 DA - 2003// TI - The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster JO - Journal of Theoretical Biology VL - 223 UR - https://doi.org/10.1016/S0022-5193(03)00035-3 DO - 10.1016/S0022-5193(03)00035-3 ID - Albert2003 ER - TY - JOUR AU - Ronen, M. AU - Rosenberg, R. AU - Shraiman, B. I. AU - Alon, U. PY - 2002 DA - 2002// TI - Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics JO - PNAS VL - 99 UR - https://doi.org/10.1073/pnas.152046799 DO - 10.1073/pnas.152046799 ID - Ronen2002 ER - TY - JOUR AU - Luscombe, N. M. AU - Babu, M. M. AU - Yu, H. AU - Snyder, M. AU - Teichmann, S. A. AU - Gerstein, M. PY - 2004 DA - 2004// TI - Genomic analysis of regulatory network dynamics reveals large topological changes JO - Nature VL - 431 UR - https://doi.org/10.1038/nature02782 DO - 10.1038/nature02782 ID - Luscombe2004 ER - TY - JOUR AU - Davidson, E. H. AU - Rast, J. P. AU - Oliveri, P. AU - Ransick, A. AU - Calestani, C. AU - Yuh, C. H. AU - Minokawa, T. AU - Amore, G. AU - Hinman, V. AU - Arenas-Mena, C. AU - Otim, O. AU - Brown, C. T. AU - Livi, C. B. AU - Lee, P. Y. AU - Revilla, R. AU - Rust, A. G. AU - Pan, Z. AU - Schilstra, M. J. AU - Clarke, P. J. AU - Arnone, M. I. AU - Rowen, L. AU - Cameron, R. A. AU - McClay, D. R. AU - Hood, L. AU - Bolouri, H. PY - 2002 DA - 2002// TI - A genomic regulatory network for development JO - Science VL - 295 UR - https://doi.org/10.1126/science.1069883 DO - 10.1126/science.1069883 ID - Davidson2002 ER - TY - JOUR AU - Lee, T. I. AU - Rinaldi, N. J. AU - Robert, F. AU - Odom, D. T. AU - Bar-Joseph, Z. AU - Gerber, G. K. AU - Hannett, N. M. AU - Harbison, C. T. AU - Thompson, C. M. AU - Simon, I. AU - Zeitlinger, J. AU - Jennings, E. G. AU - Murray, H. L. AU - Gordon, D. B. AU - Ren, B. AU - Wyrick, J. J. AU - Tagne, J. B. AU - Volkert, T. L. AU - Fraenkel, E. AU - Gifford, D. K. AU - Young, R. A. PY - 2002 DA - 2002// TI - Transcriptional Regulatory Networks in Saccharomyces cerevisiae JO - Science VL - 298 UR - https://doi.org/10.1126/science.1075090 DO - 10.1126/science.1075090 ID - Lee2002 ER - TY - JOUR AU - Shen-Orr, S. S. AU - Milo, R. AU - Mangan, S. AU - Alon, U. PY - 2002 DA - 2002// TI - Network motifs in the transcriptional regulation network of Escherichia coli JO - Nature Genetics VL - 31 UR - https://doi.org/10.1038/ng881 DO - 10.1038/ng881 ID - Shen-Orr2002 ER - TY - JOUR AU - Zhang, Z. AU - Liu, C. AU - Skogerb, G. AU - Zhu, X. AU - Lu, H. AU - Chen, L. AU - Shi, B. AU - Zhang, Y. AU - Wang, J. AU - Wu, T. AU - Chen, R. PY - 2006 DA - 2006// TI - Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors JO - PLoS Computational Biology VL - 2 UR - https://doi.org/10.1371/journal.pcbi.0020047 DO - 10.1371/journal.pcbi.0020047 ID - Zhang2006 ER - TY - JOUR AU - Papp, B. AU - Oliver, S. PY - 2005 DA - 2005// TI - Genome-wide analysis of context-dependence of regulatory networks JO - Genome Biology VL - 6 UR - https://doi.org/10.1186/gb-2005-6-2-206 DO - 10.1186/gb-2005-6-2-206 ID - Papp2005 ER - TY - JOUR AU - Bar-Joseph, Z. PY - 2004 DA - 2004// TI - Analyzing time series gene expression data JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth283 DO - 10.1093/bioinformatics/bth283 ID - Bar-Joseph2004 ER - TY - STD TI - Wang X, Wu M, Li Z, Chan C: Short time-series microarray analysis: Methods and challenges. BMC Systems Biology 2008., 2(58): ID - ref12 ER - TY - JOUR AU - Lin, J. AU - Keogh, E. AU - Lonardi, S. AU - Chiu, B. PY - 2003 DA - 2003// TI - A symbolic representation of time series, with implications for streaming algorithms JO - Proceedings of the ACM DMKD VL - 20 UR - https://doi.org/10.1145/882082.882086 DO - 10.1145/882082.882086 ID - Lin2003 ER - TY - JOUR AU - Marbach, D. AU - Prill, R. J. AU - Schaffter, T. AU - Mattiussi, C. AU - Floreano, D. AU - Stolovitzky, G. PY - 2010 DA - 2010// TI - Revealing strengths and weaknesses of methods for gene network inference JO - Proceedings of the National Academy of Sciences VL - 107 UR - https://doi.org/10.1073/pnas.0913357107 DO - 10.1073/pnas.0913357107 ID - Marbach2010 ER - TY - JOUR AU - D'haeseleer, P. PY - 2005 DA - 2005// TI - How does gene expression clustering work? JO - Nat Biotech VL - 23 UR - https://doi.org/10.1038/nbt1205-1499 DO - 10.1038/nbt1205-1499 ID - D'haeseleer2005 ER - TY - JOUR AU - Soranzo, N. AU - Bianconi, G. AU - Altafini, C. PY - 2007 DA - 2007// TI - Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm163 DO - 10.1093/bioinformatics/btm163 ID - Soranzo2007 ER - TY - JOUR AU - Toh, H. AU - Horimoto, K. PY - 2002 DA - 2002// TI - Inference of a genetic network by a combined approach of cluster analysis and graphical Gaussian modeling JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.2.287 DO - 10.1093/bioinformatics/18.2.287 ID - Toh2002 ER - TY - JOUR AU - Reverter, A. AU - Chan, E. K. F. PY - 2008 DA - 2008// TI - Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn482 DO - 10.1093/bioinformatics/btn482 ID - Reverter2008 ER - TY - JOUR AU - Zampieri, M. AU - Soranzo, N. AU - Altafini, C. PY - 2008 DA - 2008// TI - Discerning static and causal interactions in genome-wide reverse engineering problems JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn220 DO - 10.1093/bioinformatics/btn220 ID - Zampieri2008 ER - TY - JOUR AU - Opgen-Rhein, R. AU - Strimmer, K. PY - 2007 DA - 2007// TI - From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data JO - BMC Systems Biology VL - 1 UR - https://doi.org/10.1186/1752-0509-1-37 DO - 10.1186/1752-0509-1-37 ID - Opgen-Rhein2007 ER - TY - JOUR AU - Li, W. PY - 1990 DA - 1990// TI - Mutual information functions versus correlation functions JO - Journal of Statistical Physics VL - 60 UR - https://doi.org/10.1007/BF01025996 DO - 10.1007/BF01025996 ID - Li1990 ER - TY - JOUR AU - Baba, K. AU - Shibata, R. AU - Sibuya, M. PY - 2004 DA - 2004// TI - Partial correlation and conditional correlation as measures of conditional independence JO - Australian & New Zealand Journal of Statistics VL - 46 UR - https://doi.org/10.1111/j.1467-842X.2004.00360.x DO - 10.1111/j.1467-842X.2004.00360.x ID - Baba2004 ER - TY - JOUR AU - Wille, A. AU - Zimmermann, P. AU - Vranova, E. AU - Furholz, A. AU - Laule, O. AU - Bleuler, S. AU - Hennig, L. AU - Prelic, A. AU - von Rohr, P. AU - Thiele, L. AU - Zitzler, E. AU - Gruissem, W. AU - Buhlmann, P. PY - 2004 DA - 2004// TI - Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana JO - Genome Biology VL - 5 UR - https://doi.org/10.1186/gb-2004-5-11-r92 DO - 10.1186/gb-2004-5-11-r92 ID - Wille2004 ER - TY - JOUR AU - Steuer, R. AU - Kurths, J. AU - Daub, C. O. AU - Weise, J. AU - Selbig, J. PY - 2002 DA - 2002// TI - The mutual information: Detecting and evaluating dependencies between variables JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.suppl_2.S231 DO - 10.1093/bioinformatics/18.suppl_2.S231 ID - Steuer2002 ER - TY - JOUR AU - Liang, K. C. AU - Wang, X. PY - 2008 DA - 2008// TI - Gene Regulatory Network Reconstruction Using Conditional Mutual Information JO - EURASIP Journal on Bioinformatics and Systems Biology VL - 2008 UR - https://doi.org/10.1155/2008/253894 DO - 10.1155/2008/253894 ID - Liang2008 ER - TY - JOUR AU - Butte, A. J. AU - Kohane, I. S. PY - 2000 DA - 2000// TI - Mutual Information Relevance Networks: Functional Genomic Clustering Using Pairwise Entropy Measurements JO - Pacific Symposium on Biocomputing VL - 5 ID - Butte2000 ER - TY - CHAP AU - Margolin, A. A. AU - Nemenman, I. AU - Wiggins, C. AU - Stolovitzky, G. AU - Califano, A. PY - 2004 DA - 2004// TI - On The Reconstruction of Interaction Networks with Applications to Transcriptional Regulation BT - To appear in Proc. NIPS Comp. Bio. Workshop, 2004, special issue of Bioinformatics ID - Margolin2004 ER - TY - JOUR AU - Smith, V. A. AU - Jarvis, E. D. AU - Hartemink, A. J. PY - 2002 DA - 2002// TI - Evaluating functional network inference using simulations of complex biological systems JO - Bioinformatics VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.suppl_1.S216 DO - 10.1093/bioinformatics/18.suppl_1.S216 ID - Smith2002 ER - TY - JOUR AU - Geier, F. AU - Timmer, J. AU - Fleck, C. PY - 2007 DA - 2007// TI - Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge JO - BMC Systems Biology VL - 1 UR - https://doi.org/10.1186/1752-0509-1-11 DO - 10.1186/1752-0509-1-11 ID - Geier2007 ER - TY - JOUR AU - Werhli, A. V. AU - Grzegorczyk, M. AU - Husmeier, D. PY - 2006 DA - 2006// TI - Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl391 DO - 10.1093/bioinformatics/btl391 ID - Werhli2006 ER - TY - JOUR AU - Markowetz, F. AU - Spang, R. PY - 2007 DA - 2007// TI - Inferring cellular networks - a review JO - BMC Bioinformatics VL - 8 UR - https://doi.org/10.1186/1471-2105-8-S6-S5 DO - 10.1186/1471-2105-8-S6-S5 ID - Markowetz2007 ER - TY - JOUR AU - Friedman, N. PY - 2004 DA - 2004// TI - Inferring Cellular Networks Using Probabilistic Graphical Models JO - Science VL - 303 UR - https://doi.org/10.1126/science.1094068 DO - 10.1126/science.1094068 ID - Friedman2004 ER - TY - CHAP AU - D'haeseleer, P. AU - Wen, X. AU - Fuhrman, S. AU - Somogyi, R. PY - 1999 DA - 1999// TI - Linear modeling of mRNA expression levels during CNS development and injury BT - PSB 99 On-Line Proceedings ID - D'haeseleer1999 ER - TY - JOUR AU - Guo, S. AU - Seth, A. K. AU - Kendrick, K. M. AU - Zhou, C. AU - Feng, J. PY - 2008 DA - 2008// TI - Partial Granger causality - Eliminating exogenous inputs and latent variables JO - Journal of Neuroscience Methods VL - 172 UR - https://doi.org/10.1016/j.jneumeth.2008.04.011 DO - 10.1016/j.jneumeth.2008.04.011 ID - Guo2008 ER - TY - CHAP AU - Ding, M. AU - Chen, Y. AU - Bressler, S. L. PY - 2006 DA - 2006// BT - Granger Causality: Basic Theory and Application to Neuroscience ID - Ding2006 ER - TY - CHAP AU - Ding, M. AU - Chen, Y. AU - Bressler, S. L. ED - Björn Schelter, J. T. ED - Winterhalder, M. PY - 2007 DA - 2007// TI - Granger Causality: Basic Theory and Application to Neuroscience BT - Handbook of Time Series Analysis ID - Ding2007 ER - TY - JOUR AU - Lozano, A. C. AU - Abe, N. AU - Liu, Y. AU - Rosset, S. PY - 2009 DA - 2009// TI - Grouped graphical Granger modeling for gene expression regulatory networks discovery JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp199 DO - 10.1093/bioinformatics/btp199 ID - Lozano2009 ER - TY - JOUR AU - Marwan, N. AU - Romano, M. C. AU - Thiel, M. AU - Kurths, J. PY - 2007 DA - 2007// TI - Recurrence plots for the analysis of complex systems JO - Physics Reports VL - 438 UR - https://doi.org/10.1016/j.physrep.2006.11.001 DO - 10.1016/j.physrep.2006.11.001 ID - Marwan2007 ER - TY - JOUR AU - Albert, R. PY - 2005 DA - 2005// TI - Scale-free networks in cell biology JO - J Cell Sci VL - 118 UR - https://doi.org/10.1242/jcs.02714 DO - 10.1242/jcs.02714 ID - Albert2005 ER - TY - BOOK AU - Ihaka, R. AU - Gentleman, R. PY - 2009 DA - 2009// TI - R version 2.9.2 ID - Ihaka2009 ER - TY - JOUR AU - Van den Bulcke, T. AU - Van Leemput, K. AU - Naudts, B. AU - van Remortel, P. AU - Ma, H. AU - Verschoren, A. AU - De Moor, B. AU - Marchal, K. PY - 2006 DA - 2006// TI - SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-43 DO - 10.1186/1471-2105-7-43 ID - Van den Bulcke2006 ER - TY - CHAP AU - Van den Bulcke, T. AU - Van Leemput, K. AU - Naudts, B. AU - van Remortel, P. AU - Ma, H. AU - Verschoren, A. AU - De Moor, B. AU - Marchal, K. PY - 2006 DA - 2006// BT - syntren generator ID - Van den Bulcke2006 ER - TY - JOUR AU - Aach, J. AU - Church, G. M. PY - 2001 DA - 2001// TI - Aligning gene expression time series with time warping algorithms JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.6.495 DO - 10.1093/bioinformatics/17.6.495 ID - Aach2001 ER - TY - STD TI - Ferre F, Clote P: BTW: a web server for Boltzmann time warping of gene expression time series. Nucleic Acids Res 2006, (34 Web Server):W482-W485. ID - ref44 ER - TY - JOUR AU - Sakoe, H. AU - Chiba, S. PY - 1978 DA - 1978// TI - Dynamic Programming Algorithm Optimization for Spoken Word Recognition JO - IEEE Transactions on Acoustics, Speech and Signal Processing VL - ASSP-26 UR - https://doi.org/10.1109/TASSP.1978.1163055 DO - 10.1109/TASSP.1978.1163055 ID - Sakoe1978 ER - TY - JOUR AU - Velichko, V. AU - Zagoruyko, N. PY - 1970 DA - 1970// TI - Automatic recognition of 200 words JO - International Journal of Man-Machine Studies VL - 2 UR - https://doi.org/10.1016/S0020-7373(70)80008-6 DO - 10.1016/S0020-7373(70)80008-6 ID - Velichko1970 ER - TY - JOUR AU - Caiani, E. AU - Porta, A. AU - Baselli, G. AU - Turiel, M. AU - Muzzupappa, S. AU - Pagani, M. AU - Malliani, A. AU - Cerutti, S. PY - 2002 DA - 2002// TI - Analysis of cardiac left-ventricular volume based on time warping averaging JO - Medical and Biological Engineering and Computing VL - 40 UR - https://doi.org/10.1007/BF02348129 DO - 10.1007/BF02348129 ID - Caiani2002 ER - TY - JOUR AU - Giorgino, T. PY - 2009 DA - 2009// TI - Computing and Visualizing Dynamic Time Warping Alignments in R: The dtw Package JO - Journal of Statistical Software VL - 31 UR - https://doi.org/10.18637/jss.v031.i07 DO - 10.18637/jss.v031.i07 ID - Giorgino2009 ER - TY - BOOK AU - Giorgino, T. PY - 2010 DA - 2010// TI - Dynamic Time Warping algorithms cran.r-project ID - Giorgino2010 ER - TY - JOUR AU - Tormene, P. AU - Giorgino, T. AU - Quaglini, S. AU - Stefanelli, M. PY - 2009 DA - 2009// TI - Matching Incomplete Time Series with Dynamic Time Warping: An Algorithm and an Application to Post-Stroke Rehabilitation JO - Artificial Intelligence in Medicine VL - 45 UR - https://doi.org/10.1016/j.artmed.2008.11.007 DO - 10.1016/j.artmed.2008.11.007 ID - Tormene2009 ER - TY - JOUR AU - Frenzel, S. AU - Pompe, B. PY - 2007 DA - 2007// TI - Partial Mutual Information for Coupling Analysis of Multivariate Time Series JO - Phys Rev Lett VL - 99 UR - https://doi.org/10.1103/PhysRevLett.99.204101 DO - 10.1103/PhysRevLett.99.204101 ID - Frenzel2007 ER - TY - JOUR AU - Palus, M. AU - Komarek, V. AU - Hrncir, Z. AU - Sterbova, K. PY - 2001 DA - 2001// TI - Synchronization as adjustment of information rates: Detection from bivariate time series JO - Phys Rev E VL - 63 UR - https://doi.org/10.1103/PhysRevE.63.046211 DO - 10.1103/PhysRevE.63.046211 ID - Palus2001 ER - TY - JOUR AU - Pfaff, B. PY - 2008 DA - 2008// TI - VAR, SVAR and SVEC Models: Implementation Within R Package vars JO - Journal of Statistical Software VL - 27 UR - https://doi.org/10.18637/jss.v027.i04 DO - 10.18637/jss.v027.i04 ID - Pfaff2008 ER - TY - BOOK AU - Pfaff, B. PY - 2008 DA - 2008// TI - Analysis of Integrated and Cointegrated Time Series with R PB - Springer CY - New York UR - https://doi.org/10.1007/978-0-387-75967-8 DO - 10.1007/978-0-387-75967-8 ID - Pfaff2008 ER - TY - JOUR AU - Akaike, H. PY - 2003 DA - 2003// TI - A new look at the statistical model identification JO - Automatic Control, IEEE Transactions on VL - 19 UR - https://doi.org/10.1109/TAC.1974.1100705 DO - 10.1109/TAC.1974.1100705 ID - Akaike2003 ER - TY - JOUR AU - Wessel, N. AU - Suhrbier, A. AU - Riedl, M. AU - Marwan, N. AU - Malberg, H. AU - Bretthauer, G. AU - Penzel, T. AU - Kurths, J. PY - 2009 DA - 2009// TI - Detection of time-delayed interactions in biosignals using symbolic coupling traces JO - EPL (Europhysics Letters) VL - 87 UR - https://doi.org/10.1209/0295-5075/87/10004 DO - 10.1209/0295-5075/87/10004 ID - Wessel2009 ER - TY - BOOK AU - Meyer, P. E. PY - 2009 DA - 2009// TI - infotheo: Information-Theoretic Measures cran ID - Meyer2009 ER - TY - BOOK AU - Meyer, P. E. AU - Lafitte, F. AU - Bontempi, G. PY - 2009 DA - 2009// TI - minet: Mutual Information Network Inference cran ID - Meyer2009 ER - TY - JOUR AU - Meyer, P. E. AU - Kontos, K. AU - Lafitte, F. AU - Bontempi, G. PY - 2007 DA - 2007// TI - Information-Theoretic Inference of Large Transcriptional Regulatory Networks JO - EURASIP Journal on Bioinformatics and Systems Biology VL - 2007 UR - https://doi.org/10.1155/2007/79879 DO - 10.1155/2007/79879 ID - Meyer2007 ER - TY - JOUR AU - Fawcett, T. PY - 2006 DA - 2006// TI - An intoduction to ROC analysis JO - Pattern Recogn Lett VL - 27 UR - https://doi.org/10.1016/j.patrec.2005.10.010 DO - 10.1016/j.patrec.2005.10.010 ID - Fawcett2006 ER - TY - JOUR AU - Fluss, R. AU - Faraggi, D. AU - Reiser, B. PY - 2005 DA - 2005// TI - Estimation of the Youden Index and its Associated Cutoff Point JO - Biometrical Journal VL - 47 UR - https://doi.org/10.1002/bimj.200410135 DO - 10.1002/bimj.200410135 ID - Fluss2005 ER - TY - JOUR AU - Sing, T. AU - Sander, O. AU - Beerenwinkel, N. AU - Lengauer, T. PY - 2005 DA - 2005// TI - ROCR: visualizing classifier performance in R JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti623 DO - 10.1093/bioinformatics/bti623 ID - Sing2005 ER - TY - JOUR AU - Wen, X. AU - Fuhrman, S. AU - Michaels, G. S. AU - Carr, D. B. AU - Smith, S. AU - Barker, J. L. AU - Somogyi, R. PY - 1998 DA - 1998// TI - Large-scale temporal gene expression mapping of central nervous system development JO - Proceedings of the National Academy of Sciences of the United States of America VL - 95 UR - https://doi.org/10.1073/pnas.95.1.334 DO - 10.1073/pnas.95.1.334 ID - Wen1998 ER - TY - JOUR AU - Gibbons, F. D. AU - Roth, F. P. PY - 2002 DA - 2002// TI - Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation JO - Genome Research VL - 12 UR - https://doi.org/10.1101/gr.397002 DO - 10.1101/gr.397002 ID - Gibbons2002 ER - TY - JOUR AU - Eisen, M. B. AU - Spellman, P. T. AU - Brown, P. O. AU - Botstein, D. PY - 1998 DA - 1998// TI - Cluster analysis and display of genome-wide expression patterns JO - Proceedings of the National Academy of Sciences of the United States of America VL - 95 UR - https://doi.org/10.1073/pnas.95.25.14863 DO - 10.1073/pnas.95.25.14863 ID - Eisen1998 ER - TY - CHAP AU - D'haeseleer, P. AU - Wen, X. AU - Fuhrman, S. AU - Somogyi, R. PY - 1998 DA - 1998// TI - Mining the gene expression matrix: inferring gene relationships from large scale gene expression data BT - Proceedings of the second international workshop on Information processing in cell and tissues, Plenum Press UR - https://doi.org/10.1007/978-1-4615-5345-8_22 DO - 10.1007/978-1-4615-5345-8_22 ID - D'haeseleer1998 ER - TY - JOUR AU - Veiga, D. AU - Vicente, F. AU - Nicolas, M. AU - Vasconcelos, A. T. PY - 2008 DA - 2008// TI - Predicting transcriptional regulatory interactions with artificial neural networks applied to E. coli multidrug resistance efflux pumps JO - BMC Microbiology VL - 8 UR - https://doi.org/10.1186/1471-2180-8-101 DO - 10.1186/1471-2180-8-101 ID - Veiga2008 ER - TY - JOUR AU - Mukhopadhyay, N. D. AU - Chatterjee, S. PY - 2007 DA - 2007// TI - Causality and pathway search in microarray time series experiment JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btl598 DO - 10.1093/bioinformatics/btl598 ID - Mukhopadhyay2007 ER -