Table 8 A fragment of the text output of this heterogeneous pipeline workflow (see Figure 16)
From: Applications of the pipeline environment for visual informatics and genomics computations
SamToolsCamldMDtag_1.OutputNo-DuplicatesBAMfile-1.bam.bai (Binary file) | |||
|---|---|---|---|
SamToolsCamldMDtag_1.OutputNo-DuplicatesBAMfile-1.bam (Binary file) | |||
... | |||
BowtieEcoli_1.OutputMAPfile-1.map (ASCII file) | |||
r0 | - gi|110640213|ref|NC_008253.1| | 3658049 | Â |
| Â | ATGCTGGAATGGCGATAGTTGGGTGGGTATCGTTC | Â | Â |
| Â | 45567778999:9;;<===>?@@@@AAAABCCCDE | 0 | 32:T>G,34:G > A |
r1 | - gi|110640213|ref|NC_008253.1| | 1902085 | Â |
| Â | CGGATGATTTTTATCCCATGAGACATCCAGTTCGG | Â | Â |
| Â | 45567778999:9;;<===>?@@@@AAAABCCCDE | 0 | Â |
r2 | - gi|110640213|ref|NC_008253.1| | 3989609 | Â |
| Â | CATAAAGCAACAGTGTTATACTATAACAATTTTGA | Â | Â |
| Â | 45567778999:9;;<===>?@@@@AAAABCCCDE | 0 | Â |
r5 | + gi|110640213|ref|NC_008253.1| | 4249841 | Â |
| Â | CAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTA | Â | Â |
| Â | EDCCCBAAAA@@@@?>===<;;9:99987776554 | 0 | Â |
... | Â | Â | Â |